Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c22
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             188   2e-48
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        91   9e-19
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        48   8e-06
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          42   3e-04
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               31   0.78 
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   5.5  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_39895| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  188 bits (459), Expect = 2e-48
 Identities = 89/153 (58%), Positives = 107/153 (69%)
 Frame = +1

Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 354
           NPL EKRP+NF IG  IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29  NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88

Query: 355 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 534
           + +   LFK+L KYRPET                         +P  ++ G N +T LVE
Sbjct: 89  RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148

Query: 535 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 633
            KKAQLVVIAHDVDPIE+V++LPALCRKM VPY
Sbjct: 149 NKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPY 181


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 90.6 bits (215), Expect = 9e-19
 Identities = 45/87 (51%), Positives = 53/87 (60%)
 Frame = +1

Query: 373 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQL 552
           LFK+L KYRPET                         +P  ++ G N +T LVE KKAQL
Sbjct: 4   LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63

Query: 553 VVIAHDVDPIELVLFLPALCRKMGVPY 633
           VVIAHDVDPIE+V++LPALCRKM VPY
Sbjct: 64  VVIAHDVDPIEIVVWLPALCRKMQVPY 90


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = +1

Query: 496 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 633
           +R G N  TK + +  A+ +V+A D +P+E++L LP LC    VPY
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPY 139


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +1

Query: 484 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPY 633
           +  T+R G   V K + K +   V++A DV PI+++  +P +C    +PY
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPY 144


>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +1

Query: 505 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVP 630
           G +   K ++K++A L +++++ D    V  + ALC + G+P
Sbjct: 41  GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIP 82


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 486 PLWWRLIFLGNLSFSSFPQPLFPG 415
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 297 TSASSESAPSDQPIYPDTG 353
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 244 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 393
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


>SB_39895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 327

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 240 LVQICKMAQVYPHPASEGCTSASSESAPSDQPIYPDTGQD 359
           +VQ+  + Q+     SE C   +S SA S+ P YP+ G+D
Sbjct: 46  VVQLTGVIQLTEWEFSEACHPYTSGSASSEDPQYPE-GRD 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,023,984
Number of Sequences: 59808
Number of extensions: 294117
Number of successful extensions: 687
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)