Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c21
         (198 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   1.0  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    24   2.4  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    23   4.2  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    23   4.2  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    23   5.6  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    23   5.6  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    23   5.6  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    22   9.7  

>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 194 FFQGRSRRHCNAGPT-RDGSGASPEHP 117
           F Q  S  +  A PT RDGS  SP+HP
Sbjct: 792 FIQPPSMTNQVAYPTVRDGSNNSPDHP 818


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 102 FL*NDGMFGARSTPVTGRPGIAVPPGSALK 191
           FL    + G +S P+T  P  AVP  + L+
Sbjct: 416 FLQEHSLNGTKSAPITPPPSFAVPLTNQLR 445


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 98  LIFVKRWDVRGSLHSRHGSARHCSAAGI 181
           + ++ R DVR SLH+   S    S  G+
Sbjct: 364 ITYLNREDVRSSLHATKASTALTSGEGV 391


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 197 FFFQGRSRRHCNAGPTR 147
           +FF   SRR CN  P R
Sbjct: 183 YFFDTSSRRVCNIAPER 199


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 132 RSTPVTGRPGIAVPPGSALKKK 197
           ++T + G+P + +PP +A+K +
Sbjct: 630 KNTKIDGKPILTLPPKTAVKSE 651


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 146 DGSGASPEHPIVLQKSV 96
           + S  SP+HP+V+ K +
Sbjct: 809 NASAVSPDHPVVITKFI 825


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 197 FFFQGRS-RRHCNAGPTRDGSGASPEHPIVLQKSV*YTGPSMRELSDIKLKRTDTTL 30
           FF + +S R + N+         + E  +++QK + Y      E+ D+K   TDT +
Sbjct: 73  FFSEKQSVRENGNSSAGEKKQKWTSEQHLLVQKIIKYKNHQYYEILDLKKTCTDTEI 129


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 187 RADPGGTAMPGRPVTGVERA 128
           RA PG TA+P R  T  + A
Sbjct: 49  RARPGATAVPRRSPTSPQSA 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 856,385
Number of Sequences: 5004
Number of extensions: 13880
Number of successful extensions: 30
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)