Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c21
         (198 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3831| Best HMM Match : RVT_1 (HMM E-Value=0.0028)                   26   4.2  
SB_6169| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.5  
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  
SB_33488| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.3  

>SB_3831| Best HMM Match : RVT_1 (HMM E-Value=0.0028)
          Length = 379

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 169 TAMPGRPVTGVERAPNIPSFYKNQFNILVPQ*GNFQ 62
           T   GRP++ V   PN+P   +  + +++ + G +Q
Sbjct: 125 TPPSGRPLSRVPMTPNMPECKETDWGLVLTERGKYQ 160


>SB_6169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = -2

Query: 137 GASPEHPI--VLQKSV*YTGPSMRELSDIKLKR 45
           G  P+H I  V + S+  TGP++  +SD++L++
Sbjct: 58  GILPDHNITYVYRDSMCQTGPALNAMSDLRLEQ 90


>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1134

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 191 FQGRSRRHCNAGPTRDGSGASPEHP 117
           +Q  SR   +A   RDGSGA PE P
Sbjct: 526 WQTASRTCTHACGCRDGSGARPEPP 550


>SB_33488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 163 MPGRPVTGVERAPNIPSFYK 104
           MPGR +TG ERA   P F++
Sbjct: 97  MPGRYLTGSERAAAKPFFHR 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,695,632
Number of Sequences: 59808
Number of extensions: 113530
Number of successful extensions: 299
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 16,821,457
effective HSP length: 44
effective length of database: 14,189,905
effective search space used: 297988005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)