Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c21
         (198 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z72511-6|CAA96659.2|  391|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    25   7.4  
AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen pro...    25   7.4  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    25   7.4  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    25   7.4  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    25   7.4  
Z79694-1|CAB01959.1|  303|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical pr...    25   9.8  
Z68507-1|CAA92826.1|  337|Caenorhabditis elegans Hypothetical pr...    25   9.8  
V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein ( Caeno...    25   9.8  
U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protei...    25   9.8  
J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein ( C.ele...    25   9.8  
AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen prot...    25   9.8  

>Z81503-1|CAB04111.1|  305|Caenorhabditis elegans Hypothetical
           protein F14F7.1 protein.
          Length = 305

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 178 PGGTAMPGRPVTGVERAP 125
           PG    PGRP TG   AP
Sbjct: 166 PGSDGQPGRPATGGGAAP 183


>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
           protein ZK617.1c protein.
          Length = 6629

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 188 QGRSRRHCNAGPTRDGSGASPEHPIVLQKSV*YTGPSMRELSD--IKLKRTD 39
           + RSRR  NA   +DG    P +P    K V  +G    E SD    LK+ D
Sbjct: 149 ESRSRRGSNAPFAKDGLPEQPANPFAQLKKV-KSGAGGLEKSDSMASLKKLD 199


>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
           protein ZK617.1b protein.
          Length = 7158

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 188 QGRSRRHCNAGPTRDGSGASPEHPIVLQKSV*YTGPSMRELSD--IKLKRTD 39
           + RSRR  NA   +DG    P +P    K V  +G    E SD    LK+ D
Sbjct: 688 ESRSRRGSNAPFAKDGLPEQPANPFAQLKKV-KSGAGGLEKSDSMASLKKLD 738


>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical
           protein ZK617.1c protein.
          Length = 6629

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 188 QGRSRRHCNAGPTRDGSGASPEHPIVLQKSV*YTGPSMRELSD--IKLKRTD 39
           + RSRR  NA   +DG    P +P    K V  +G    E SD    LK+ D
Sbjct: 149 ESRSRRGSNAPFAKDGLPEQPANPFAQLKKV-KSGAGGLEKSDSMASLKKLD 199


>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical
           protein ZK617.1b protein.
          Length = 7158

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 188 QGRSRRHCNAGPTRDGSGASPEHPIVLQKSV*YTGPSMRELSD--IKLKRTD 39
           + RSRR  NA   +DG    P +P    K V  +G    E SD    LK+ D
Sbjct: 688 ESRSRRGSNAPFAKDGLPEQPANPFAQLKKV-KSGAGGLEKSDSMASLKKLD 738


>Z72511-6|CAA96659.2|  391|Caenorhabditis elegans Hypothetical
           protein F55A11.5 protein.
          Length = 391

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 144 REWSEPRTSHRFTKI-SLIYWSL 79
           R W EPR  H + K+ SL++W+L
Sbjct: 310 RSWKEPR-RHFYVKLTSLMFWTL 331


>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 126 GARSTPVTGRPGIAV 170
           GAR  P TGRPG  +
Sbjct: 118 GARINPATGRPGFCI 132


>AF022985-10|AAB69961.1|  325|Caenorhabditis elegans Collagen
           protein 142 protein.
          Length = 325

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 126 GARSTPVTGRPGIAV 170
           GAR  P TGRPG  +
Sbjct: 118 GARINPATGRPGFCI 132


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 114 DGMFGARSTPVTGRPGIAVPPGSALKKK 197
           +G  G R +P TG P    PP  A  KK
Sbjct: 482 EGPRGPRRSPPTGSPPTGSPPTGAPPKK 509


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 114 DGMFGARSTPVTGRPGIAVPPGSALKKK 197
           +G  G R +P TG P    PP  A  KK
Sbjct: 503 EGPRGPRRSPPTGSPPTGSPPTGAPPKK 530


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 114 DGMFGARSTPVTGRPGIAVPPGSALKKK 197
           +G  G R +P TG P    PP  A  KK
Sbjct: 488 EGPRGPRRSPPTGSPPTGSPPTGAPPKK 515


>Z79694-1|CAB01959.1|  303|Caenorhabditis elegans Hypothetical
           protein C15A11.1 protein.
          Length = 303

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 117 GMFGARSTPVTGRPGIAVPPGSA 185
           G  G  ST   G PG A PPG A
Sbjct: 172 GAAGTTSTNEPGSPGPAGPPGPA 194


>Z74472-4|CAA98942.1|  301|Caenorhabditis elegans Hypothetical
           protein F23H12.4 protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 181 DPGGTAMPGRPVTGVERAPNIP 116
           DPG    PGRP  G + AP  P
Sbjct: 166 DPGEAGTPGRP--GTDAAPGSP 185


>Z68507-1|CAA92826.1|  337|Caenorhabditis elegans Hypothetical
           protein M18.1 protein.
          Length = 337

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = +3

Query: 111 NDGMFGARSTPVT---GRPGIAVPPG 179
           NDG  GA   P T   GRPG A  PG
Sbjct: 193 NDGRPGAPGAPGTRSVGRPGTAGSPG 218


>V00147-1|CAA23463.1|  296|Caenorhabditis elegans protein (
           Caenorhabditis elegansgene Col-1 coding for a collagen.
           ).
          Length = 296

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 181 DPGGTAMPGRPVTGVERAPNIP 116
           DPG    PGRP  G + AP  P
Sbjct: 161 DPGEAGTPGRP--GTDAAPGSP 180


>U53155-5|AAC48270.1|  303|Caenorhabditis elegans Collagen protein
           43 protein.
          Length = 303

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 181 DPGGTAMPGRPVTGVERAPNIP 116
           DPG    PGRP  G +  P +P
Sbjct: 168 DPGEAGTPGRP--GTDATPGLP 187


>J01047-1|AAA27988.1|  296|Caenorhabditis elegans protein (
           C.elegans (nematode)collagen 1 (col-1) gene, complete
           cds. ).
          Length = 296

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 181 DPGGTAMPGRPVTGVERAPNIP 116
           DPG    PGRP  G + AP  P
Sbjct: 161 DPGEAGTPGRP--GTDAAPGSP 180


>AB072926-1|BAB69889.1|  303|Caenorhabditis elegans collagen
           protein.
          Length = 303

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 181 DPGGTAMPGRPVTGVERAPNIP 116
           DPG    PGRP  G +  P +P
Sbjct: 168 DPGEAGTPGRP--GTDATPGLP 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,938,152
Number of Sequences: 27780
Number of extensions: 88558
Number of successful extensions: 239
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)