Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c21
         (198 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    20   2.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   2.4  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    20   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   3.2  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          19   5.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   5.7  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    19   7.5  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      19   7.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    19   7.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    18   9.9  

>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 102 FL*NDGMFGARSTPVT 149
           F  +DG+FG   +PVT
Sbjct: 248 FTVHDGIFGMALSPVT 263


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 159 RADP*REWSEPRTSHRFTKISLIYWSLNEGTFRY 58
           R++P   WSE   +     + L + S+N+    Y
Sbjct: 566 RSNP-TPWSEDAMTEALEAVRLGHMSINQAAIHY 598


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 125 EHPIVLQKSV*YTGPSMRELS 63
           E P+V Q S  YT P  +++S
Sbjct: 66  ETPVVSQGSDSYTAPDGQQVS 86


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 129  ARSTPVTGRPGIAVPP 176
            AR+ PV+G P    PP
Sbjct: 1848 ARNIPVSGSPEPPPPP 1863



 Score = 18.2 bits (35), Expect = 9.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 68  LSDIKLKRTD 39
           LSD+ +KRT+
Sbjct: 837 LSDLSIKRTE 846


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 144 REWSEPRTSHRFT 106
           R WS PR S + T
Sbjct: 45  RSWSRPRESAQTT 57


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 5/20 (25%), Positives = 12/20 (60%)
 Frame = +2

Query: 122 VRGSLHSRHGSARHCSAAGI 181
           ++GS+ +  G+  HC+   +
Sbjct: 189 IKGSISNIDGAEDHCNKTAV 208


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 133 RAPNIPSFYKNQFNILVP 80
           R P    F KN+  ++VP
Sbjct: 60  RCPPGSKFIKNRCRVIVP 77


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 133 RAPNIPSFYKNQFNILVP 80
           R P    F KN+  ++VP
Sbjct: 60  RCPPGSKFIKNRCRVIVP 77


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 102 FL*NDGMFGARSTPVT 149
           F   DG+FG   +P+T
Sbjct: 248 FTAQDGIFGMALSPMT 263


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 117 GMFGARSTPVTGR 155
           G+    STP TGR
Sbjct: 388 GLVSGSSTPGTGR 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,904
Number of Sequences: 438
Number of extensions: 1164
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)