Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c19
         (180 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   1.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   3.1  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     19   4.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   7.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       18   9.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    18   9.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    18   9.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    18   9.6  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/15 (60%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
 Frame = +3

Query: 6   NDVICFSK-LNSLYE 47
           N +ICFSK L+ +YE
Sbjct: 133 NFIICFSKLLSDMYE 147


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -3

Query: 178 FFFNIVNVMCNQCVFYNK 125
           F  N+ +  C+QC++  K
Sbjct: 352 FVVNLWSGFCSQCIWQEK 369


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 101 FILVNDIIP*LCFTRRILLVKRVQF 27
           FIL N+II  +  T  I+L K V F
Sbjct: 205 FILNNEIIRSIQGTGTIILKKTVCF 229


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/10 (50%), Positives = 10/10 (100%)
 Frame = -2

Query: 104 YFILVNDIIP 75
           +F+L+++IIP
Sbjct: 280 FFLLISEIIP 289


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 116 YLNNYFILVNDIIP*LC 66
           +LNNY  L   I+   C
Sbjct: 403 FLNNYLFLAVGIVGGAC 419


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 113 LNNYFILVNDIIP 75
           L+ +F+LV +IIP
Sbjct: 286 LHVFFLLVVEIIP 298


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 113 LNNYFILVNDIIP 75
           L+ +F+LV +IIP
Sbjct: 286 LHVFFLLVVEIIP 298


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -3

Query: 148 NQCVFYN 128
           +QC+FYN
Sbjct: 334 DQCLFYN 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,146
Number of Sequences: 438
Number of extensions: 407
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 39
effective length of database: 129,261
effective search space used:  2585220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)