Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c18
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...   148   6e-37
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    35   0.009
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    34   0.016
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    31   0.11 
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    30   0.34 
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    28   1.4  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    28   1.4  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    27   3.2  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     27   3.2  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    27   3.2  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.2  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   4.2  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   5.6  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    26   5.6  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   7.4  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   7.4  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    25   9.8  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   9.8  

>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score =  148 bits (359), Expect = 6e-37
 Identities = 73/171 (42%), Positives = 111/171 (64%), Gaps = 7/171 (4%)
 Frame = +2

Query: 104 ENGTDCEI--NQKNIDRTSKFDNKLLKQKIRKRGIIFLSTIPPYMNVAKIREIFSQFGEV 277
           EN  D E   N  +I + S  + +  ++ I++ G+I+LS IPPYM   K+R+I SQ+G++
Sbjct: 89  ENELDEETTKNANSIKKISLEEVEKQRKAIKRSGVIYLSRIPPYMAPNKLRQILSQYGKI 148

Query: 278 GRIYLQP--TGKPGEKRKRVPNQ---FSEGWVEFEKKKIAKQVAVKLNNTKIGTRKKSRY 442
           GR+YL P  + K  ++ +   N+   + EGW+EFE K++AK VA  LN  +IG +K S Y
Sbjct: 149 GRVYLTPESSAKRAQRLRNGGNKRVMYEEGWIEFESKRVAKSVAELLNTNQIGGKKSSWY 208

Query: 443 YDMIWNIKYIPRFKWIHLSERLAYERAAMKQRLRAEIAQAKKEAHYLQSNV 595
           +D IWN+KY+P+FKW HL+E++A E AA + RL+ EI Q +K+      NV
Sbjct: 209 HDDIWNMKYLPKFKWHHLTEQIAAENAARESRLKVEIEQGRKQLKQYMRNV 259


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = +2

Query: 188 RKRGIIFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTGKPGEKRKRVPNQFSEGWVEFE 367
           +K+G++++  +P      ++R  FSQFG V R+ +    K G  +          ++EFE
Sbjct: 102 KKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK-------HYAFIEFE 154

Query: 368 KKKIAKQVAVKLNN 409
              +A  VA  ++N
Sbjct: 155 SLDVANVVAETMHN 168


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +2

Query: 134 KNIDRTSKFDNKLLKQKIRKRGIIFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTG 304
           KN       D    K   R   ++ +   P   +  ++  +FS FGE+GRI + P G
Sbjct: 485 KNFFEEHGVDLDAFKNAARSDNVLLVKNFPYGTSAEELTSLFSPFGELGRILIPPAG 541


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +2

Query: 200 IIFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTGKPGEKRKRVPNQFSEGWVEFEKKKI 379
           ++F+  IP  ++  ++ EIF+Q G V    L    + G  +         G+ EF   + 
Sbjct: 8   VVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGK-------GYGFCEFFDSET 60

Query: 380 AKQVAVKLNNTKIGTRK 430
                 KLNN+++G RK
Sbjct: 61  TAMAVRKLNNSELGPRK 77


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
 Frame = +2

Query: 203 IFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTGKPGEKRKRVPNQFSEGWVEFEKKKIA 382
           I++  +P     + + E+F  FG   + ++    K      + P  F+  ++ FE K  A
Sbjct: 22  IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFA--FITFENKCSA 79

Query: 383 KQVAVKLNNTKI-GTRKKSRYYDMIWNIK 466
                 LN +   G   K  Y  ++   K
Sbjct: 80  DNAIASLNGSSFQGNTLKVEYTHIVERYK 108


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 371 FSRTRPILLRID*ELFCVFHLVFQSAED 288
           F R RP+++ +   +FC+FH+   +A+D
Sbjct: 137 FGRRRPMIIAVF--IFCIFHIAVATAKD 162


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 319 FFTWFSSRLKINSTDFSELTEYFTYFGNVHVRG 221
           +F WF+    +  T+ +++T  + YF +  +RG
Sbjct: 105 YFYWFTKMTAMTGTEMAQITTPYFYFPSGFIRG 137


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = +2

Query: 125 INQKNIDRTSKFDNKLLKQKIRKRGIIF--LSTIPPYMNVAKIRE-IFSQFGEVGRIYLQ 295
           +++ N + ++K    LL   I + GII   L  +  + N++  RE IF    ++G   ++
Sbjct: 396 LDEGNAEESTKI-RLLLLYIIYRDGIILQDLFRLFRHSNLSTSREQIFQNLEQLGTRVIK 454

Query: 296 PTGKPGEKRKRVPNQFSEGWVEFEKKKIAKQVAVKLNN 409
                  KRK V N    G   +E  +    + V L N
Sbjct: 455 NLTDQSSKRKEVANSLPAGEDVYELSRYVPTLKVVLEN 492


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -1

Query: 316 FTWFSSRLKINSTDFSELT 260
           F+W +SRL+I+S D+S+ +
Sbjct: 155 FSWINSRLQIHSIDYSKFS 173


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 413 KIGTRKKSRYYDMIWNIKYIPRFKWI 490
           K+   +K+  Y   WN+++IPR K +
Sbjct: 237 KLNKSEKTNKYHTEWNLEHIPRLKLV 262


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 88  FNIRHFTRFKVG-TYLQMSFRNFESF 14
           F + H TR+ V  TYL +S+ NF +F
Sbjct: 515 FFLPHSTRYLVNLTYLDLSYNNFVTF 540


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = +2

Query: 245  IREIFSQFGEVGRIYLQPTGKPGEKRKRVPNQFSEGWVEFEKKKIAKQVAVKLNNTKIGT 424
            +RE  ++  +  ++    T K   + +RVP Q S   ++ E +++  Q+A   N T +  
Sbjct: 878  LREKEAKKVQCAQVVADYTAKANTRCERVPVQLSPAELDNEIERLQMQIAEWRNRTGVSV 937

Query: 425  RKKSRYY 445
             + +  Y
Sbjct: 938  EQAAEDY 944


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 179 QKIR-KRGIIFLSTIPPYMNVAKIREIFSQFGEVG 280
           Q +R K+ +I+ S I    N  K RE+ ++FG+VG
Sbjct: 236 QSLRDKQRVIYTSPIKALSN-QKYRELLAEFGDVG 269


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 182 KIRKRGIIFLSTIPPYMNVAKIREIFSQFGEVG 280
           K R+R +I+ S I    N  K RE+ S+FG+VG
Sbjct: 166 KNRQR-VIYTSPIKSLSN-QKYRELLSEFGDVG 196


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
 Frame = +2

Query: 242 KIREIFSQFGEVGRIYLQPTGKPGEKRKRVPNQF---SEGWVEFEKKKIAKQVAVKLNNT 412
           K +E  S   E   +    T   G KRKR+PN         ++     I+   A+     
Sbjct: 23  KEQENTSTVNESDVLATSTTASSGVKRKRLPNDLVGQLRDKIQENPNDISSWYALVEEYG 82

Query: 413 KIGTRKKSR--YYDMIWNIKYIPRFKWI-HLSERLAY 514
             G  ++ R  Y  M+    Y+PR  W+ ++S  LA+
Sbjct: 83  SKGKHEELRETYEQMLRPFPYVPRV-WVDYISSELAF 118


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 227 YMNVAKIREIFSQFGEVGRIYLQPT 301
           + N   IR  FS+FG + ++ L PT
Sbjct: 253 HFNEENIRSFFSKFGVLEKVELNPT 277


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 139 IFLVNFTICTILGYSFCFNIRHFTRFKVGTYLQMSF 32
           IFL   +  +    S  F++ +FTRFK   Y+   F
Sbjct: 15  IFLGQLSKSSFCATSRAFSVFYFTRFKRSAYVSAPF 50


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +2

Query: 242  KIREIFSQFGEVGRIYLQPTGKPGEKRKRVPNQFSEGWVEFEKKKIAKQVAVKLNNT 412
            KIR + S+F E+    L P  K G  R  V    +  +V  E   I   VA     T
Sbjct: 1089 KIRNVLSEFEEMDCATLTPYTKKGNARHPVAMLGAREYVFSENSGILGDVAAGKEQT 1145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,298
Number of Sequences: 5004
Number of extensions: 50077
Number of successful extensions: 178
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)