Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c18
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1581 + 27891709-27891964,27892749-27892800,27893071-278931... 130 1e-30
08_02_0651 - 19714348-19714395,19715319-19715429,19715503-197155... 36 0.038
11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802... 33 0.15
05_01_0223 + 1660246-1660614 33 0.20
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 33 0.20
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544 33 0.27
10_01_0298 - 3094197-3094307,3095093-3095253,3095462-3095666,309... 32 0.47
01_06_1490 - 37732724-37735020,37735803-37735980 31 0.82
03_03_0196 + 15331604-15331646,15332141-15332260,15334106-153342... 31 1.1
09_04_0424 + 17444261-17444665,17445974-17446367,17447367-174474... 30 1.4
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 30 1.9
04_04_1030 - 30249160-30250403,30250787-30251666 29 2.5
01_06_1491 - 37739027-37740153,37740318-37741289,37741641-37741845 29 3.3
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034... 29 4.4
07_03_1591 + 27967065-27967090,27967236-27968054,27984940-279850... 29 4.4
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502... 29 4.4
08_02_1395 - 26737972-26738418,26738505-26738738,26738887-267391... 28 5.8
03_01_0160 + 1302366-1302731,1303318-1303364,1303455-1303800 28 5.8
01_06_1493 + 37753816-37755558 28 5.8
12_01_1050 + 10798692-10798867,10798972-10799169,10799617-108006... 28 7.7
05_04_0116 + 18131510-18133192 28 7.7
>07_03_1581 +
27891709-27891964,27892749-27892800,27893071-27893138,
27893321-27893410,27893503-27893633,27893913-27894047,
27894124-27894141
Length = 249
Score = 130 bits (313), Expect = 1e-30
Identities = 62/136 (45%), Positives = 89/136 (65%), Gaps = 1/136 (0%)
Frame = +2
Query: 191 KRGIIFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTGKPGEKRKRV-PNQFSEGWVEFE 367
KRG+ +LS +PP MN + +R++ S++GEV RIYL P G+ K V ++EGW+EF
Sbjct: 49 KRGVCYLSRVPPNMNPSHVRQMLSKYGEVQRIYLVPEGQGHRKHTNVRAKAYTEGWIEFS 108
Query: 368 KKKIAKQVAVKLNNTKIGTRKKSRYYDMIWNIKYIPRFKWIHLSERLAYERAAMKQRLRA 547
KK +AK+VA LN +IG +K+S +Y IWNIKY+ +FKW L +A + +Q+L
Sbjct: 109 KKSVAKRVANLLNGEQIGGKKRSPFYYDIWNIKYLKKFKWDDLVGEIAEKTHIREQKLNL 168
Query: 548 EIAQAKKEAHYLQSNV 595
EIA AKK+ + SNV
Sbjct: 169 EIAAAKKQRDHYLSNV 184
>08_02_0651 -
19714348-19714395,19715319-19715429,19715503-19715572,
19716081-19716178,19716272-19716319,19716391-19716446,
19718191-19718314,19718417-19718506
Length = 214
Score = 35.5 bits (78), Expect = 0.038
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +2
Query: 200 IIFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTGKPGEKRKRVPNQFSEGWVEFEKKKI 379
++++ IP +++ F QFG V R+ + K G+ + G++EFE ++
Sbjct: 55 VLYIGHIPHGFYEEQMQGFFQQFGTVKRLRIARNRKTGKSKHY-------GFIEFENPEV 107
Query: 380 AKQVAVKLNN 409
AK VA ++NN
Sbjct: 108 AKIVADEMNN 117
>11_02_0073 -
8020401-8020512,8020594-8020679,8020761-8020921,
8021196-8021400,8021664-8021697,8022352-8022422,
8023363-8023542,8023625-8023765,8023859-8023975,
8024074-8024469
Length = 500
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 203 IFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTGKPGEKR 322
I++ +P + KI+EIF + GEV ++ L P K G KR
Sbjct: 317 IYVKNLPENASKEKIKEIFEKHGEVTKVVL-PPAKDGHKR 355
>05_01_0223 + 1660246-1660614
Length = 122
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +2
Query: 125 INQKNIDRTSKFDNKLLKQKIRKRGIIFLSTIPPYMNVA--KIREIFSQFGEV 277
+ K ++ ++ K L + KRG+ +LS +PP MN + ++R + S+ GEV
Sbjct: 71 LGSKGVEEKREWALKRLDD-LGKRGVCYLSRVPPNMNPSHVRLRRLLSKHGEV 122
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 33.1 bits (72), Expect = 0.20
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = +2
Query: 203 IFLSTIPPYMNVAKIREIFSQFGEVGRI 286
I++S +PP + V +++E+F G+VGRI
Sbjct: 443 IYISNLPPDVTVEELQELFGGIGQVGRI 470
>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
Length = 1274
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +2
Query: 236 VAKIREIFSQFGEVGRIYLQPTGKPGEKRKRVPNQFSEGWV----EFEKKKIAKQVAVKL 403
V KI+E+ S+ G ++ Q T K K + F + V + EKKKI + + K
Sbjct: 132 VEKIKELVSEMNSFGLVHQQETPKQWRKTDSIMVDFDKDIVIRSRDEEKKKIIRILLDKA 191
Query: 404 NNTKI 418
NNT +
Sbjct: 192 NNTDL 196
>10_01_0298 -
3094197-3094307,3095093-3095253,3095462-3095666,
3096349-3096534,3096616-3096756,3096843-3096959,
3097046-3097456
Length = 443
Score = 31.9 bits (69), Expect = 0.47
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 203 IFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTGKPGEKR 322
I++ +P + KI+EIF GEV ++ L P K G KR
Sbjct: 289 IYVKNLPENASKEKIKEIFEIHGEVTKVVL-PPAKAGNKR 327
>01_06_1490 - 37732724-37735020,37735803-37735980
Length = 824
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 160 KFRCSVYIFLVNFTICTILGYSFCFNIRHFTRFKVGTYLQ 41
K +C VY F++CT + C +R F+ VG +LQ
Sbjct: 298 KVKCDVYSLCGPFSVCTENALTSCSCLRGFSEQNVGEWLQ 337
>03_03_0196 + 15331604-15331646,15332141-15332260,15334106-15334221,
15334661-15334749,15334885-15334927,15335567-15335741,
15335840-15335971,15336046-15336383,15336791-15337129,
15337293-15337975,15338228-15338807,15339356-15339679,
15340149-15340262
Length = 1031
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +2
Query: 326 RVPNQFSEGWVEFEKKKIAKQVAVKLNNTKIGTRKKSRYYDMIWNIKYIPR--FKWIHLS 499
R+ N+F GW ++ I +Q VKL G + + Y ++W++ + + +W
Sbjct: 861 RIQNKF-RGWKGRKEFMIIRQRIVKLQAHVRGHQVRKNYKKVVWSVGIVEKVILRWRRKG 919
Query: 500 ERLAYERAAMKQRLRAEIAQAKKEAHY 580
L R + + +I AK E Y
Sbjct: 920 RGLRGFRPEKQLEGQTQIQPAKTEDEY 946
>09_04_0424 +
17444261-17444665,17445974-17446367,17447367-17447425,
17447507-17447637,17447737-17447833,17447936-17448100
Length = 416
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +2
Query: 203 IFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTGKPGEKRKRVPNQFSEGWVEFEKKKIA 382
+F+ + P ++ +R+ FSQ+GE+ + + P GK G+V+F ++K A
Sbjct: 287 VFVGGLDPNVSEDDLRQTFSQYGEISSVKI-PVGK------------QCGFVQFVQRKNA 333
Query: 383 KQVAVKLNNTKIG 421
+ LN + IG
Sbjct: 334 EDALQGLNGSTIG 346
>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +2
Query: 200 IIFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTGKPGEKRKRVPNQFSEGWVEFEKKKI 379
++ + + +N A ++EIF FGEV + L ++ +P + G++EF+K+
Sbjct: 894 VLHIDHLSRNVNEAHLKEIFGNFGEVVNVELSM-----DRMVNLPRGY--GYIEFKKRTD 946
Query: 380 AKQVAVKLNNTKI-GTRKKSRY 442
A++ + ++ +I G K R+
Sbjct: 947 AEKALLYMDGGQIDGNVVKLRF 968
>04_04_1030 - 30249160-30250403,30250787-30251666
Length = 707
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Frame = +3
Query: 69 VKCLMLKQKEYPRMVQI---VKLTRKI*TEHLNL 161
+KCL LK +E PRMV++ ++ R++ +HL+L
Sbjct: 610 LKCLKLKGEERPRMVEVAIELEALRRLMKQHLSL 643
>01_06_1491 - 37739027-37740153,37740318-37741289,37741641-37741845
Length = 767
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 160 KFRCSVYIFLVNFTICTILGYSFCFNIRHFTRFKVGTYLQ 41
K +C VY F++CT + C +R F VG +LQ
Sbjct: 306 KAQCDVYSLCGPFSVCTENAMASCSCLRGFGEQNVGEWLQ 345
>09_04_0680 -
19401891-19402049,19402556-19402928,19403385-19403421,
19403587-19403667,19405215-19405280,19407453-19407948,
19408050-19408283,19408473-19408772,19409241-19409423,
19410412-19410414
Length = 643
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 251 HVFWQRSCKGESSTKILYLVFVFSVLIICYQI*MFC 144
H W C G + + Y+ FVFS ++C + FC
Sbjct: 152 HCPWVGQCIGRRNYRFFYM-FVFSTTLLCLYVFGFC 186
>07_03_1591 +
27967065-27967090,27967236-27968054,27984940-27985022,
27985590-27985744,27985956-27986461,27986551-27986703,
27987146-27987485,27987558-27987822,27987897-27988634,
27989734-27989779,27989849-27990223,27991511-27991567,
27991640-27992438
Length = 1453
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 119 CEINQKNIDRTSKFDNKLLKQKIRKRGIIF 208
CE+N DR + D+KL ++ + K G++F
Sbjct: 348 CEMNTPEKDRVYRHDSKLREEMVPKVGMVF 377
>01_01_0660 +
5029070-5029177,5029303-5029398,5029494-5029556,
5029836-5029913,5030446-5030614,5030797-5031180,
5031959-5032042,5032143-5032288,5032810-5033070,
5033147-5033328,5033421-5033586,5033650-5033703,
5034702-5034965,5035088-5035303,5035388-5035540,
5035630-5035827
Length = 873
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 423 VPIFVLFNFTATCFAIFFFSNSTHPSEN*LGTLLR 319
+P ++FN AT AI FS HP N G L R
Sbjct: 792 LPRNLIFNCIATLLAIKHFSEGRHPPPNIAGVLER 826
>08_02_1395 -
26737972-26738418,26738505-26738738,26738887-26739183,
26739399-26739581,26739778-26739834,26739960-26740016,
26740228-26740322,26740714-26740765,26740821-26740910
Length = 503
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 251 HVFWQRSCKGESSTKILYLVFVFSVLIICYQI*MFC 144
H W C G + + Y+ FVFS ++C + FC
Sbjct: 267 HCPWVGQCIGLRNYRFFYM-FVFSTTLLCLYVFAFC 301
>03_01_0160 + 1302366-1302731,1303318-1303364,1303455-1303800
Length = 252
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = +2
Query: 185 IRKRGIIFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTGKPGEKRKRVPNQFSEGWVEF 364
I + G + S +P A+IRE+F +FG + + L G R +V F
Sbjct: 69 IYETGKVVASGLPYTTTEAEIRELFERFGPLRSLQLSRFPDSGNFR-------GLAFVSF 121
Query: 365 EKKKIAKQVAVKLNNTKIGTR 427
E ++ + +++L+ KIG R
Sbjct: 122 ESNEVVMK-SLELDGFKIGNR 141
>01_06_1493 + 37753816-37755558
Length = 580
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 160 KFRCSVYIFLVNFTICTILGYSFCFNIRHFTRFKVGTYLQ 41
K +C VY F++CT + C +R F VG +LQ
Sbjct: 66 KAQCDVYSLCGPFSVCTENAMAPCSCLRGFGEQNVGEWLQ 105
>12_01_1050 +
10798692-10798867,10798972-10799169,10799617-10800649,
10800866-10801219
Length = 586
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = +2
Query: 290 LQPTGKPGEKRKRVPNQFSEGWVEFEKKKIAKQVAVKLNNTKIGTRKKSRYYDMIWNIKY 469
L+P +P E + ++ S G E + + Q+ +KL++ + R S D++W I
Sbjct: 218 LKPFHQPDEPLEEYGHRISVG-EEGQMQVRGIQILLKLSDDENNLRIMSNTDDLVWKIVA 276
Query: 470 IPRFKWIHLSERLAYER 520
+ K +HL + + R
Sbjct: 277 LINDKELHLRKHDKWSR 293
>05_04_0116 + 18131510-18133192
Length = 560
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 392 AVKLNNTKIGTRKKSRYYDMIWNIKYIPRFKWIHLSERLAYERAAMKQRLRAEIAQAKKE 571
AV +N + T + ++ ++ ++ I W+ L + LA RAA++ LR I K
Sbjct: 252 AVAVNEIILETTRNDKFIHIV-DLGGIHHAHWVELLQGLATRRAAVRPCLRLTIVHEHK- 309
Query: 572 AHYL 583
H+L
Sbjct: 310 -HFL 312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,048,261
Number of Sequences: 37544
Number of extensions: 268374
Number of successful extensions: 680
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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