Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c18
(667 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35399| Best HMM Match : BCL_N (HMM E-Value=7) 39 0.003
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 36 0.022
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 34 0.12
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_13965| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_58589| Best HMM Match : ATP-cone (HMM E-Value=2.2) 29 2.6
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_49274| Best HMM Match : p450 (HMM E-Value=0) 29 4.5
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 28 5.9
SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17) 28 7.9
>SB_35399| Best HMM Match : BCL_N (HMM E-Value=7)
Length = 182
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/34 (52%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
Frame = +2
Query: 491 HLSERLAYERAAMKQRLRAEIAQAKKEAH-YLQS 589
H + A+E+AA +QR+R EI+QAKK+A+ YL+S
Sbjct: 35 HTFSQFAFEKAAREQRMRTEISQAKKDANFYLES 68
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +2
Query: 191 KRGIIFLSTIPPYMNVAKIREIFSQF 268
K GI++LS +PP+M AKIR FSQF
Sbjct: 15 KPGIVYLSRLPPFMKPAKIRHTFSQF 40
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 36.3 bits (80), Expect = 0.022
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 188 RKRGIIFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTG 304
R + +I +P N ++R +FS FG++GR+ L P+G
Sbjct: 421 RSKTVIVAKNLPYGTNAEELRTLFSAFGQLGRVILPPSG 459
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 33.9 bits (74), Expect = 0.12
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Frame = +2
Query: 143 DRTSKFDNKLLKQKIR------KRGIIFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTG 304
D+ +F++K+ K K + G+I+L IP +I++ F QFG V RI L +
Sbjct: 74 DKQKEFEDKVKKIKPKGDEDELSPGVIYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSK 133
Query: 305 KPGEKRKRVPNQFSEGWVEFEKKKIAKQVAVKLNN 409
K + +VEF ++AK A ++N
Sbjct: 134 KSARSK-------GYAFVEFACDEVAKIAADTMHN 161
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 31.9 bits (69), Expect = 0.48
Identities = 26/95 (27%), Positives = 47/95 (49%)
Frame = +2
Query: 143 DRTSKFDNKLLKQKIRKRGIIFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTGKPGEKR 322
D+ SKF L K + F+S +P ++I E+FS+ G V ++ L T + G+ +
Sbjct: 159 DKFSKFPTSLDKHTL------FVSNLPFDAKESEIEELFSKHGVVKQVRLV-TNRAGKPK 211
Query: 323 KRVPNQFSEGWVEFEKKKIAKQVAVKLNNTKIGTR 427
G+VE+E++ A + L+ T++ R
Sbjct: 212 -------GYGYVEYEQESSASTAVLTLDKTEVKGR 239
>SB_13965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = +2
Query: 212 STIPPYMNVAKIREIFSQFGEVGRIYLQ---PTGKPGEKR 322
S++ PY+N A + +F + +G YL+ P G+P EKR
Sbjct: 51 SSLCPYVNEACLLVLFVFYSSIGVSYLELRFPIGEPAEKR 90
>SB_23753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 517
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Frame = +2
Query: 203 IFLSTIPPYMNVAKIREIFSQFGEVGRIYL-QPTGKPGEKRKRVPNQ------FSEGWVE 361
+F+ +PPY I+++F + G V +YL + GK E + + N F +V
Sbjct: 44 LFVINVPPYCTKLAIKKLFGKCGGVKSVYLHKQPGKVKETKTSLLNTDNEVKGFKVAYVV 103
Query: 362 FEKKKIAKQVAVKLNNTKI 418
F KK + A+KL+ ++
Sbjct: 104 F-KKPSSLDAALKLDPMEV 121
>SB_58589| Best HMM Match : ATP-cone (HMM E-Value=2.2)
Length = 360
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = +2
Query: 314 EKRKRVPNQFSEGWVE---FEKKKIAKQVAVKLNNTKIGTRKKSRYYDMIWNIKYIPRFK 484
+++ VP + + G + F+ ++AK + + K+ ++ + + RFK
Sbjct: 215 KEKHEVPREATRGIKKGGRFDNSQLAKDIGIA-EMIKVNDMTADQFVSTLQRVLTQGRFK 273
Query: 485 WIHLSERLAYERAAMKQRLRAEIAQAKKEAHYLQS 589
E A AMK+RLRA +A+A Y+Q+
Sbjct: 274 -----ESSARISKAMKRRLRAPVAEAADLVEYVQA 303
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 203 IFLSTIPPYMNVAKIREIFSQFGEV 277
IF+ +P Y+N +++E+ S FGE+
Sbjct: 675 IFIGGLPNYLNEDQVKELLSSFGEL 699
>SB_49274| Best HMM Match : p450 (HMM E-Value=0)
Length = 568
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/87 (25%), Positives = 34/87 (39%)
Frame = +2
Query: 335 NQFSEGWVEFEKKKIAKQVAVKLNNTKIGTRKKSRYYDMIWNIKYIPRFKWIHLSERLAY 514
+ EG + EKK+I QV L G ++ ++W + YI L + L
Sbjct: 342 SHMEEGQKQVEKKEIENQVVATLAADTFGAGLENVSSSLLWAVAYIASHD--ELQDELRD 399
Query: 515 ERAAMKQRLRAEIAQAKKEAHYLQSNV 595
E + R I Q K LQ+ +
Sbjct: 400 EIMRVVGNDRVPILQDKGNMPLLQATI 426
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 203 IFLSTIPPYMNVAKIREIFSQFGEVGRIYLQPTGKPGEKRKRVPNQFSEGWVEFEKKKIA 382
+ L IP + ++I E FS GE+ +Y+ K E++ F+ FE K
Sbjct: 123 VILKNIPSSIGESQILEHFSSSGEIASVYIPENLKTKERKGHCIVTFASVTEAFEVVKKR 182
Query: 383 K 385
K
Sbjct: 183 K 183
>SB_40971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +2
Query: 71 EMPDVETERV---PENGTDCEINQKNIDRTSKFDNKLLKQKIRKR 196
E+P V+ +RV ENG +N K+++ T K K +KQK+ KR
Sbjct: 660 EIP-VKKDRVLAKAENGK--AVNGKSVEPTKKMTKKPVKQKVEKR 701
>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
Length = 1440
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -2
Query: 168 LLSNLDVLSIFFWLISQS 115
L+SN D S+FFWL+++S
Sbjct: 109 LISNSDPSSLFFWLVTES 126
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,073,285
Number of Sequences: 59808
Number of extensions: 332323
Number of successful extensions: 898
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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