Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c17
         (142 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)                    25   7.4  
SB_15681| Best HMM Match : Na_Ca_ex (HMM E-Value=1.9e-36)              25   7.4  
SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.4  

>SB_50198| Best HMM Match : Frizzled (HMM E-Value=0)
          Length = 654

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 131 IKTLCVCVFYLSHKMDVWQKSQPILVFFSYITR 33
           +  +  C FY  + MDVW+   P   F +YI R
Sbjct: 499 VSAVIACSFYEYNNMDVWKVRAP---FNTYICR 528


>SB_15681| Best HMM Match : Na_Ca_ex (HMM E-Value=1.9e-36)
          Length = 183

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/35 (28%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -3

Query: 140 FFLIKTLCVCVFYLSHKMDVWQKSQPILV-FFSYI 39
           F+ +  + + +F+LS  + VW +S  +L+ +F+Y+
Sbjct: 104 FYSLALIILIIFFLSGDVIVWWESLVLLLCYFAYV 138


>SB_13922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 98  SHKMDVWQKSQPILVFFSYITRFNLILKLIIT 3
           SH M+ W+ +  ++V F+   +  L+LK ++T
Sbjct: 396 SHAMEYWKGAMAVVVVFAAFAQ--LVLKFLVT 425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,661,646
Number of Sequences: 59808
Number of extensions: 40625
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 16,821,457
effective HSP length: 26
effective length of database: 15,266,449
effective search space used: 305328980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)