Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c17
         (142 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY193728-1|AAO62001.1|  519|Anopheles gambiae cytochrome P450 CY...    22   2.3  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    21   4.0  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    20   9.2  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    20   9.2  

>AY193728-1|AAO62001.1|  519|Anopheles gambiae cytochrome P450
           CYPm3r5 protein.
          Length = 519

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = -3

Query: 134 LIKTLCVCVFYL-SHKMDVWQ 75
           L+ TLC+CV+ L   K   W+
Sbjct: 14  LLATLCLCVYLLVVRKYSFWR 34


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 134 LIKTLCVCVFYL 99
           LI  LCV VFYL
Sbjct: 245 LISFLCVLVFYL 256


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 10  INFSIKLNLVM*EKNTNIGCDFCQTSILCDK 102
           +NF ++L+ V+ + N  +G     TSI  D+
Sbjct: 784 LNFKLQLDEVLLKANRTLGFILRFTSIFRDQ 814


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 94  IKWTSGKNHNQY*CFFLTLRDST 26
           I WT   NH    C+++  R  T
Sbjct: 93  IMWTREMNHYVIRCYYVYTRMET 115


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,903
Number of Sequences: 2352
Number of extensions: 1281
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 26
effective length of database: 502,827
effective search space used: 10056540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)