Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c17
         (142 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021503-3|CAA16423.1|  324|Caenorhabditis elegans Hypothetical ...    27   1.4  
Z48334-8|CAE17779.1|  176|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical pr...    25   7.3  

>AL021503-3|CAA16423.1|  324|Caenorhabditis elegans Hypothetical
           protein Y68A4A.6 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 140 FFLIKTLCVCVFYLSHKMDVWQ-KSQPILVFFSYITRFNLIL 18
           FF+I  L + +++  HKM+  Q K  PIL  F  + + +  L
Sbjct: 25  FFIISYLTLPIYFYVHKMNRHQEKDLPILQLFHKLVKMSYFL 66


>Z48334-8|CAE17779.1|  176|Caenorhabditis elegans Hypothetical
           protein F10B5.9 protein.
          Length = 176

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 140 FFLIKTLCVCVFYLSHKMDVWQKSQP 63
           FF+I  +  CVFY  +K    Q S P
Sbjct: 118 FFIIHKIVSCVFYAYYKRTALQISDP 143


>U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical
           protein R12C12.3 protein.
          Length = 340

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 134 LIKTLCVCVFYLSHKMDVWQKSQPILVFFSYITRF 30
           LI  + V VF L    D WQK    + FF+Y TR+
Sbjct: 59  LITPIFVLVF-LPLWQDQWQKYSFHMSFFAYSTRY 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,824,967
Number of Sequences: 27780
Number of extensions: 34422
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 12,740,198
effective HSP length: 27
effective length of database: 11,990,138
effective search space used: 227812622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)