Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c17
         (142 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13730.1 68416.m01733 cytochrome P450, putative similar to Cy...    28   0.98 
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ...    25   5.2  
At4g27420.1 68417.m03941 ABC transporter family protein D.melano...    25   9.1  

>At3g13730.1 68416.m01733 cytochrome P450, putative similar to
           Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
           [Arabidopsis thaliana]; identical to CYP90D
           (GI:14971017) [Arabidopsis thaliana]
          Length = 491

 Score = 27.9 bits (59), Expect = 0.98
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 104 YLSHKMDVWQKSQPILV-FFSYITRFNLILKLIIT 3
           +LS  MD+W + QP+L+   S    F ++ K +I+
Sbjct: 172 FLSESMDLWSEDQPVLLQDVSKTVAFKVLAKALIS 206


>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 402

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 121 CVCVCFIYHIKWTSGKNHN 65
           CV  C I+HI+   GKN N
Sbjct: 361 CVECCTIFHIECVLGKNSN 379


>At4g27420.1 68417.m03941 ABC transporter family protein
           D.melanogaster P element CaSpeR-1 gene (white
           protein),PID:g870996
          Length = 639

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 127 KLCVCVCFIYHIKWTSGKNHNQY*CFFLTL 38
           +L +  CF+    W +G NHN    FF+TL
Sbjct: 474 ELILPTCFLVITYWMAGLNHNLA-NFFVTL 502


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,580
Number of Sequences: 28952
Number of extensions: 28619
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 12,070,560
effective HSP length: 27
effective length of database: 11,288,856
effective search space used: 214488264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)