Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c16
         (397 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   1.1  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   5.9  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    20   7.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    20   7.7  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    20   7.7  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    20   7.7  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    20   7.7  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -3

Query: 314 NIT*ILLYIIFSEEPSDKSSCSAAALDACICGRTYLKYL*K*SV-SRTVPYNVNPMQTNT 138
           N+T I  ++        + +C   +++ CICG  +   L   S+   T   N  P++   
Sbjct: 20  NLTKIFGFLPVCSSQKGQKTCLNLSINYCICGYIFSAILFSLSILGLTEDLNSAPIRMKN 79

Query: 137 P 135
           P
Sbjct: 80  P 80


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +1

Query: 121 KLHKGGVLVCIGLTLYGTVLLTDHFYKYFKYVRPQIQASKAAAEQELLSEGSSEKIM*RR 300
           ++HK    +C     Y T+ +T+    + +  RP   A+  A   ELL   S   ++ R+
Sbjct: 296 QVHKQ-TAICFKAPRYHTLDITEPVKVFIQLRRPSDGATSEALPFELLPLDSEPGMLKRK 354


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 112 KHCGIRISSWY*KG*KCELFLS 47
           +HC ++  SW   G + +L L+
Sbjct: 140 QHCDMKFGSWTYDGNQLDLVLN 161


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 112 KHCGIRISSWY*KG*KCELFLS 47
           +HC ++  SW   G + +L L+
Sbjct: 140 QHCDMKFGSWTYDGNQLDLVLN 161


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 112 KHCGIRISSWY*KG*KCELFLS 47
           +HC ++  SW   G + +L L+
Sbjct: 140 QHCDMKFGSWTYDGNQLDLVLN 161


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 112 KHCGIRISSWY*KG*KCELFLS 47
           +HC ++  SW   G + +L L+
Sbjct: 140 QHCDMKFGSWTYDGNQLDLVLN 161


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 112 KHCGIRISSWY*KG*KCELFLS 47
           +HC ++  SW   G + +L L+
Sbjct: 140 QHCDMKFGSWTYDGNQLDLVLN 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,374
Number of Sequences: 336
Number of extensions: 2180
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)