Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c16
         (397 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30220.1 68414.m03697 sugar transporter family protein simila...    30   0.64 
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to...    29   1.5  
At1g12410.1 68414.m01434 ATP-dependent Clp protease proteolytic ...    28   2.0  
At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger) fa...    27   6.0  
At2g03830.1 68415.m00344 expressed protein                             26   7.9  

>At1g30220.1 68414.m03697 sugar transporter family protein similar
           to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit)
           [Homo sapiens]; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 580

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +1

Query: 214 VRPQIQASKAAAEQELLSEGSSEKI 288
           V  +I+A K + E E+L EGSSEKI
Sbjct: 237 VEQEIRALKDSVETEILEEGSSEKI 261


>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
           myosin heavy chain [Arabidopsis thaliana]
           gi|602328|emb|CAA84067.
          Length = 1242

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
 Frame = +1

Query: 46  RLKIIHIFILFSTMKKYGSRNALYDKLHKGGVLVCI----GLT-LYGTVLLTDHFYKYFK 210
           RL  +H   +   +      N +Y   + G +L+ +    GL  LY   ++  +   YFK
Sbjct: 67  RLSYLHEPAVLDNLATRYELNEIYT--YTGNILIAVNPFQGLPHLYDAEVMEKYKEAYFK 124

Query: 211 YVRPQIQASKAAAEQELLSEGSSEKIM 291
            + P + A    A +E+++EG ++ I+
Sbjct: 125 ELNPHVFAIGGIAYREMINEGRNKCIL 151


>At1g12410.1 68414.m01434 ATP-dependent Clp protease proteolytic
           subunit (ClpP2) identical to nClpP2 GI:5360589 from
           [Arabidopsis thaliana]
          Length = 279

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 161 HCMGLFYSLITFTSTSSMCGHRYKHP 238
           HC+GL Y+L  F   +   GHR+  P
Sbjct: 161 HCVGLAYNLAGFLLAAGEKGHRFAMP 186


>At4g27470.1 68417.m03947 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 243

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -2

Query: 243 CFGCLYLWPHILEVLVKVISE*NSPIQCQSDAN*YTTLVQLII*SIAGSVFLHGTKK 73
           C+ C+Y W H+    V V    N+   C+S+    T+LV L    ++      G+KK
Sbjct: 64  CWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNIT-ITSLVPLYGRGMSSPSSTFGSKK 119


>At2g03830.1 68415.m00344 expressed protein 
          Length = 123

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 185 LITFTSTSSM-CGHRYKHPKQLLNKSFCQKVLQRKL 289
           L+  T TSS+   H Y  P Q L+K    K+  RKL
Sbjct: 16  LLLVTPTSSLQLKHPYSSPSQGLSKKIVTKMATRKL 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,312,424
Number of Sequences: 28952
Number of extensions: 161145
Number of successful extensions: 356
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)