Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c15
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   2.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.2  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    27   3.2  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    25   9.7  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 40  TPLVSHSHALRKVSACPSQHPRYAPSSTPMPGSTHS 147
           TP  SH  A +++S  PS+HP+ + S+T    S  S
Sbjct: 254 TPFESHGPA-KQISVQPSEHPKPSISTTTTGSSYRS 288


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 530 APQQHAELQRVHQVLHQEQSAQ 465
           APQQH +LQR+  +L   Q  Q
Sbjct: 129 APQQHPQLQRMMPILSSNQPIQ 150


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +2

Query: 476 VPGGGPGGLAEVRRAA 523
           V GGG GGLA  RRAA
Sbjct: 12  VIGGGSGGLASARRAA 27


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 554 EARPHVREAPQQHAELQRVHQVL 486
           EAR  +RE  ++HA+++R+ + +
Sbjct: 176 EARTALREVQERHADIKRIERTI 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,764
Number of Sequences: 5004
Number of extensions: 26057
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)