Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c15
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)             71   6e-13
SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)             46   2e-05
SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)                  31   1.1  
SB_52706| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_46428| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_44472| Best HMM Match : Y_phosphatase (HMM E-Value=0)               29   4.5  
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)                  29   4.5  
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)                28   5.9  
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)                      28   7.8  

>SB_38172| Best HMM Match : Reticulon (HMM E-Value=4.4e-05)
          Length = 142

 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 31/59 (52%), Positives = 47/59 (79%)
 Frame = +3

Query: 465 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDA 641
           +RRLFLVEDL DS+K  V+L+ L+Y+   F+GITL  +G+I LFT+PKAY+M + ++++
Sbjct: 33  VRRLFLVEDLADSIKLLVVLYILSYLAQWFSGITLTFIGFIGLFTVPKAYDMYREEINS 91


>SB_13432| Best HMM Match : Reticulon (HMM E-Value=5.1e-16)
          Length = 621

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 24/67 (35%), Positives = 35/67 (52%)
 Frame = +3

Query: 309 FRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXXYELRRLFLVE 488
           +R+   V+ A+QK+   +PFK LL+ E+ +                      LRRLFLVE
Sbjct: 422 YRVGMTVMGAIQKSGTENPFKTLLDKEIEIPKEKAVEMAESLAEHINCLTKSLRRLFLVE 481

Query: 489 DLVDSLK 509
           D+VDS+K
Sbjct: 482 DIVDSIK 488


>SB_12537| Best HMM Match : DSPc (HMM E-Value=1.3e-09)
          Length = 195

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 548 RPHVREAPQQHAELQRVHQVLHQEQS 471
           RPH+R A QQ + +Q+ H  LH++ +
Sbjct: 169 RPHIRLASQQWSAVQQFHDYLHEDDN 194


>SB_52706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
 Frame = +1

Query: 79  SACPSQHPRYAPSSTP------MPGSTHSDCTPKWSR*STGG 186
           +A PS+ PR++P+STP      +PG +  D +P  +  ST G
Sbjct: 35  NAPPSKSPRHSPASTPTSSWHDLPGPSLPDNSPSVASTSTSG 76


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 575 DDERDPVEARPHVREAPQQHAELQRVHQVLHQEQS 471
           DD  +  E R   R   ++H ++  VH  LH EQS
Sbjct: 151 DDGWEGKEVRKEARRQEEEHRKVTVVHSKLHPEQS 185


>SB_46428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
 Frame = +1

Query: 79  SACPSQHPRYAPSSTP------MPGSTHSDCTPKWSR*STGG 186
           +A PS+ PR++P+STP      +PG +  D +P  +  ST G
Sbjct: 148 NAPPSKSPRHSPASTPTSSWHDLPGPSLPDNSPSVASTSTSG 189


>SB_44472| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 206

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 83  HARVSTL--AMHHPRPPCLVRPTATAPRSGVVDL 178
           H R ST   ++H  +PP LV  TA   R+GV+ L
Sbjct: 119 HRRTSTTRSSVHESKPPVLVHCTAGVGRTGVIIL 152


>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
          Length = 603

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 608 LRQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQSAQ 465
           ++Q++Q+Y  +   +   + R   ++  QQH + Q+  Q  HQ+Q  Q
Sbjct: 272 IQQQQQQYIQQQQVQHMQQQRLQQQQLLQQHLQRQQQQQRRHQQQQQQ 319


>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
          Length = 820

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 52  SHSHALRKVSACPSQHPRYAPSSTPMPGST 141
           +H   LR  +A P + P  AP+  P  GST
Sbjct: 148 THGSTLRSTNAGPMRSPNDAPNDAPTHGST 177


>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
          Length = 697

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 608 LRQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQ 474
           LR+R+QR+  +  +R     R   ++  QQ  +LQ++ Q    +Q
Sbjct: 267 LRERQQRHLQQQQQRQQQFQRQQQQQQMQQRQQLQQLQQQQQPQQ 311


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,567,223
Number of Sequences: 59808
Number of extensions: 226502
Number of successful extensions: 1008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)