Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c15
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.28 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.64 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.4  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   3.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.0  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -2

Query: 602 QREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQSAQ 465
           Q   +  T+     P + + H  +A QQH +    H +  Q+Q +Q
Sbjct: 167 QMHHQMHTQHPHMQPQQGQ-HQSQAQQQHLQAHEQHMMYQQQQQSQ 211


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 50   FLILTRYVKCQHARVST-LAMHHPRPPCLVRPTATAP 157
            F++ +  V+ +H      L +HH   PC++R +  AP
Sbjct: 1079 FVLHSLAVELEHGAAGLRLCLHHRDLPCVLRASTPAP 1115


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 321 KNVLQAVQKTNDGHPFKWL 377
           + +L+A +++N   PF+WL
Sbjct: 210 RGILEAARRSNLSQPFQWL 228


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 321 KNVLQAVQKTNDGHPFKWL 377
           + +L+A +++N   PF+WL
Sbjct: 300 RGILEAARRSNLSQPFQWL 318


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 573 ILGWIALFTLPKAYEMNKAQVDANLELAR 659
           I+G I L  +  AY+ ++ +    +ELAR
Sbjct: 834 IIGGIGLIIIEVAYKKHQIRKQKKMELAR 862


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 14/57 (24%), Positives = 20/57 (35%)
 Frame = -2

Query: 635 HLRLVHFVGLRQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQSAQ 465
           H  + H    +  +QR   E       E R H      Q  + Q+  Q   Q+Q  Q
Sbjct: 51  HKSIYHRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQ 107



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = -2

Query: 620 HFVGLRQREQRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQEQS 471
           H    +QR++     + ER+  E    V    QQ  + Q+      Q+QS
Sbjct: 59  HSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQQS 108


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 141 GRTRHGGRGWCIA 103
           G+TRH   G CIA
Sbjct: 820 GKTRHQNTGCCIA 832


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,750
Number of Sequences: 438
Number of extensions: 2056
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)