Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c15
(663 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak ... 43 2e-04
At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak ... 43 2e-04
At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak ... 42 3e-04
At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) conta... 41 8e-04
At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) simil... 39 0.003
At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak... 38 0.005
At3g10260.3 68416.m01230 reticulon family protein weak similarit... 38 0.006
At3g10260.2 68416.m01229 reticulon family protein weak similarit... 38 0.006
At3g10260.1 68416.m01228 reticulon family protein weak similarit... 38 0.006
At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak ... 38 0.006
At3g18260.1 68416.m02323 reticulon family protein (RTNLB9) weak ... 37 0.014
At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low ... 37 0.014
At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak ... 35 0.056
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro... 34 0.073
At3g10915.2 68416.m01315 reticulon family protein low similarity... 32 0.39
At3g10915.1 68416.m01314 reticulon family protein low similarity... 32 0.39
At1g78310.1 68414.m09126 VQ motif-containing protein contains PF... 29 2.8
At1g12090.1 68414.m01399 protease inhibitor/seed storage/lipid t... 29 2.8
At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid t... 28 6.4
At1g25390.1 68414.m03152 protein kinase family protein contains ... 27 8.4
>At5g41600.1 68418.m05054 reticulon family protein (RTNLB4) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251, SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 257
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +3
Query: 522 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELA 656
LW L+ +G+C+N +TL + LFT+P YE + +VDA E A
Sbjct: 180 LWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKA 224
>At2g46170.1 68415.m05741 reticulon family protein (RTNLB5) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 255
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/64 (37%), Positives = 36/64 (56%)
Frame = +3
Query: 465 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDAN 644
LR + L DL L V LW ++ VG FN +TL+ + ++ L T+P YE ++ +VD
Sbjct: 161 LRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPL 220
Query: 645 LELA 656
E A
Sbjct: 221 AEKA 224
>At4g23630.1 68417.m03403 reticulon family protein (RTNLB1) weak
similarity to Nogo-C protein [Rattus norvegicus]
GI:6822251; contains Pfam profile PF02453: Reticulon
Length = 275
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = +3
Query: 522 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 638
LW L+ +G CFN +TL + + LFT+P AY+ + +VD
Sbjct: 201 LWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVD 239
>At3g61560.1 68416.m06895 reticulon family protein (RTNLB6) contains
Pfam profile PF02453: Reticulon
Length = 253
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +3
Query: 465 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 638
LR + L DL L LW ++ VG FN +TL+ + ++ L T+P YE ++ +VD
Sbjct: 161 LRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVD 218
>At4g11220.1 68417.m01818 reticulon family protein (RTNLB2) similar
to SP|Q64548 Reticulon 1 (Neuroendocrine-specific
protein) {Rattus norvegicus}; contains Pfam profile
PF02453: Reticulon
Length = 271
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +3
Query: 465 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDAN 644
LR + D+ L LW L+ +G C++ +TL + + LFT+P Y+ + +VD+
Sbjct: 178 LREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSY 237
Query: 645 LELARA 662
E A A
Sbjct: 238 GEKAMA 243
>At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak
similarity to neuroendocrine-specific protein C [Homo
sapiens] GI:307311; identical to cDNA RTNLB11
GI:32331878
Length = 200
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 504 LKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 638
L+ ++LW ++YVG N +TL+ +G + + P YE + +D
Sbjct: 128 LQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID 172
>At3g10260.3 68416.m01230 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 267
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +3
Query: 522 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLE 650
LW VG+C N +T++ +G++ T+P YE + +VD ++
Sbjct: 193 LWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMD 235
>At3g10260.2 68416.m01229 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 247
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +3
Query: 522 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLE 650
LW VG+C N +T++ +G++ T+P YE + +VD ++
Sbjct: 173 LWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMD 215
>At3g10260.1 68416.m01228 reticulon family protein weak similarity
to Nogo-C protein [Rattus norvegicus] GI:6822251;
contains Pfam profile PF02453: Reticulon; identical to
cDNA GI:32331854
Length = 247
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +3
Query: 522 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLE 650
LW VG+C N +T++ +G++ T+P YE + +VD ++
Sbjct: 173 LWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMD 215
>At1g64090.1 68414.m07260 reticulon family protein (RTNLB3) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 255
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +3
Query: 522 LWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 638
LW L+ VG+ N +TLI + + LFT+P YE + +VD
Sbjct: 176 LWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVD 214
>At3g18260.1 68416.m02323 reticulon family protein (RTNLB9) weak
similarity to RTN2-C [Homo sapiens] GI:3435090; contains
Pfam profile PF02453: Reticulon
Length = 225
Score = 36.7 bits (81), Expect = 0.014
Identities = 14/41 (34%), Positives = 27/41 (65%)
Frame = +3
Query: 516 VLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 638
+ L+ ++ +G FN + L+ +G++++ TLP YEM + VD
Sbjct: 149 ISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVD 189
>At2g15280.1 68415.m01742 reticulon family protein (RTNLB10) low
similarity to neuroendocrine-specific protein C [Homo
sapiens] GI:307311, SP|Q64548 Reticulon 1
(Neuroendocrine-specific protein) {Rattus norvegicus};
contains Pfam profile PF02453: Reticulon
Length = 201
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 468 RRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANL 647
R +++ + + V+LW +++VG N +T++ LG + +P YE + +D L
Sbjct: 108 REIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKL 167
Query: 648 EL 653
L
Sbjct: 168 SL 169
>At4g01230.1 68417.m00162 reticulon family protein (RTNLB7) weak
similarity to SP|O95197 Reticulon protein 3
(Neuroendocrine-specific protein-like) {Homo sapiens};
contains Pfam profile PF02453: Reticulon
Length = 242
Score = 34.7 bits (76), Expect = 0.056
Identities = 16/64 (25%), Positives = 36/64 (56%)
Frame = +3
Query: 465 LRRLFLVEDLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDAN 644
LR + L D+ + + + LW ++ +G F+ ++L+ + ++ + T+P YE + ++D
Sbjct: 158 LRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPI 217
Query: 645 LELA 656
E A
Sbjct: 218 AEKA 221
>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
protein contains similarity to SP|Q02917 Early nodulin
55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
domain
Length = 370
Score = 34.3 bits (75), Expect = 0.073
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 31 P*QTPLVSHSHALRKVSA-CPSQHPRYAPSSTPMPGSTHSDCTPK 162
P TP S +HA A PS P +APS +P +HS TPK
Sbjct: 233 PAHTPSHSPAHAPSHSPAHAPSHSPAHAPSHSPAHSPSHSPATPK 277
>At3g10915.2 68416.m01315 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 226
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 507 KFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 638
K + LW L+ +G+ + TL+ +G I T+P Y +++VD
Sbjct: 148 KVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVD 191
>At3g10915.1 68416.m01314 reticulon family protein low similarity to
rS-Rex-s [Rattus norvegicus] GI:1143717,
neuroendocrine-specific protein C [Homo sapiens]
GI:307311; contains Pfam profile PF02453: Reticulon
Length = 220
Score = 31.9 bits (69), Expect = 0.39
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 507 KFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVD 638
K + LW L+ +G+ + TL+ +G I T+P Y +++VD
Sbjct: 142 KVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVD 185
>At1g78310.1 68414.m09126 VQ motif-containing protein contains
PF05678: VQ motif
Length = 311
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 43 PLVSHSHALRKVSACPSQHPRYAPSSTPMPGSTHSDCTP 159
PLVS ++ +A PSQH + P P P S S P
Sbjct: 219 PLVSPRWYQQQENAPPSQHNSFPPPHPPPPSSAVSQTVP 257
>At1g12090.1 68414.m01399 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to 14 kDa
polypeptide [Catharanthus roseus] GI:407410; contains
Pfam protease inhibitor/seed storage/LTP family domain
PF00234
Length = 137
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 85 CPSQHPRYAPSSTPMPGSTHSDCTPK 162
CPS P+ P TP P S S C PK
Sbjct: 33 CPSPKPKPTPKPTPSPSSGSSKC-PK 57
>At4g08670.1 68417.m01428 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 208
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 46 LVSHSHALRKVSACPSQHPRYAPSSTPMPGSTHSDCT 156
L+S S + + A +P +P P PG + SDC+
Sbjct: 13 LLSSSSLVTPIHARNKSNPAKSPVGAPAPGPSSSDCS 49
>At1g25390.1 68414.m03152 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 629
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 551 LQRDHAHHPRLDSAVHAAEGLRNEQ 625
LQ+D+ P ++ VH +G++NE+
Sbjct: 547 LQQDNTMRPTMEQVVHELKGIQNEE 571
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,927,268
Number of Sequences: 28952
Number of extensions: 150754
Number of successful extensions: 751
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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