Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c14
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    28   1.4  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    27   1.8  
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb...    25   7.4  
SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...    25   7.4  
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    25   9.8  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.8  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/65 (21%), Positives = 28/65 (43%)
 Frame = -2

Query: 599 EFNFKGSTL**KNKKGGLSIYFSWKMTPKIFKILSTFKASLCCPGLSDLDDPGVKRFALS 420
           E+N+    +  K    G  + F W + P +  IL    +      L ++  P +   A+ 
Sbjct: 58  EYNYNSHPIAAKYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIG 117

Query: 419 RRFYW 405
           R+++W
Sbjct: 118 RQWFW 122


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 317 TGKILGIVQKVGLDETII*TPKKWGVVDLVLSAYHK 210
           TGK LGIV   G ++ +I  P   G+VD+V+    K
Sbjct: 82  TGKSLGIVVVSGRNKGLIKNPFLGGLVDIVMRRQDK 117


>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 362 TEIDSQDTWTGVWHT 406
           +  D +D W GVW+T
Sbjct: 72  SNFDEEDNWNGVWNT 86


>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 240 DPPLFWGLNNRLVEPYLLDYTQDFSGGKQ 326
           DP + +G    ++E    +  QDF GGKQ
Sbjct: 296 DPNILYG-TREIIEARTKEMIQDFGGGKQ 323


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 356 VVFRNSGLHWLFSTGKILGIVQK 288
           VVF N+ LHW+    K   IV K
Sbjct: 99  VVFSNAALHWIMRQPKNRPIVMK 121


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 520 HQRFSKFCRPLKLHCVV 470
           H  F+K  RPL LHC +
Sbjct: 129 HNLFTKDARPLTLHCTL 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,136
Number of Sequences: 5004
Number of extensions: 57810
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)