Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c14
         (666 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    26   1.2  
AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic pr...    25   2.8  
AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox prote...    24   3.7  

>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +1

Query: 349 KTTCYRDRLPGHLDRRVAHQ*KRLDKANLLTPGSSRSDN---PGQHSEALK 492
           K TC+R R PGH+ R    +      +  +   S +++N    G   E+LK
Sbjct: 201 KITCHRCRKPGHMKRDCPMESNNTPTSTTMRDYSRKNENCSSSGGQRESLK 251


>AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic
           protein protein.
          Length = 109

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 106 SKYASQ*EEHNRENRLEISESERKLWFKN 192
           +KY ++       N L ++E++ K+WF+N
Sbjct: 75  NKYLTRARRIEIANALHLNETQVKIWFQN 103


>AJ439353-4|CAD27926.1|  338|Anopheles gambiae putative hox protein
           protein.
          Length = 338

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 148 RLEISESERKLWFKN 192
           RL +SE + K+WF+N
Sbjct: 232 RLRLSEKQVKIWFQN 246


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,744
Number of Sequences: 2352
Number of extensions: 14782
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66486645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)