Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c14
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52810-1|CAB57215.1|   67|Caenorhabditis elegans protein ( Caeno...    29   3.0  
U55376-2|AAA98004.1|  132|Caenorhabditis elegans C.elegans homeo...    29   3.0  
X52811-1|CAB57217.1|   60|Caenorhabditis elegans protein ( Caeno...    28   5.2  
U49944-3|AAM51525.1|  341|Caenorhabditis elegans Mesodermal line...    28   5.2  
AC024847-9|AAR30201.1|  147|Caenorhabditis elegans C.elegans hom...    28   5.2  
Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U56860-2|AAA98706.3|  225|Caenorhabditis elegans Defective phary...    28   6.8  
AY766389-1|AAV34757.1|  170|Caenorhabditis elegans PHA-2 protein.      28   6.8  

>X52810-1|CAB57215.1|   67|Caenorhabditis elegans protein (
           Caenorhabditis elegansceh-1 gene, unknown homeobox. ).
          Length = 67

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 94  KCVVSKYASQ*EEHNRENRLEISESERKLWFKN 192
           K   S+Y S  E  N   +L++SE++ K+WF+N
Sbjct: 19  KFKTSRYLSVVERLNLAIQLQLSETQVKIWFQN 51


>U55376-2|AAA98004.1|  132|Caenorhabditis elegans C.elegans homeobox
           protein 1 protein.
          Length = 132

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 94  KCVVSKYASQ*EEHNRENRLEISESERKLWFKN 192
           K   S+Y S  E  N   +L++SE++ K+WF+N
Sbjct: 19  KFKTSRYLSVVERLNLAIQLQLSETQVKIWFQN 51


>X52811-1|CAB57217.1|   60|Caenorhabditis elegans protein (
           Caenorhabditis elegansceh-9 gene, unknown homeobox. ).
          Length = 60

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 109 KYASQ*EEHNRENRLEISESERKLWFKN 192
           KY S  +      RL+++E++ K+WF+N
Sbjct: 24  KYLSSSDRSELAKRLDVTETQVKIWFQN 51


>U49944-3|AAM51525.1|  341|Caenorhabditis elegans Mesodermal lineage
           specificationprotein 2 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 109 KYASQ*EEHNRENRLEISESERKLWFKN 192
           +Y S  E  N   +L ++E++ K+WF+N
Sbjct: 224 RYLSSQERSNLAQKLHLTETQVKIWFQN 251


>AC024847-9|AAR30201.1|  147|Caenorhabditis elegans C.elegans
           homeobox protein 9 protein.
          Length = 147

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 109 KYASQ*EEHNRENRLEISESERKLWFKN 192
           KY S  +      RL+++E++ K+WF+N
Sbjct: 93  KYLSSSDRSELAKRLDVTETQVKIWFQN 120


>Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical
           protein C08F8.2b protein.
          Length = 719

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 589 LRGLLYNKKIKKGGCRFTLAGK*HQRFSKFCRPLKLHCVVPGCLISMIQVSK 434
           +R  +  +  K+ G    L  +  + F ++C P  L+ V PG LI +  +SK
Sbjct: 86  MRRPMVRQLAKENGINDKLFMRSFKSFREYCTPEDLNSVDPGLLILLSDISK 137


>Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical
           protein C08F8.2a protein.
          Length = 721

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 589 LRGLLYNKKIKKGGCRFTLAGK*HQRFSKFCRPLKLHCVVPGCLISMIQVSK 434
           +R  +  +  K+ G    L  +  + F ++C P  L+ V PG LI +  +SK
Sbjct: 88  MRRPMVRQLAKENGINDKLFMRSFKSFREYCTPEDLNSVDPGLLILLSDISK 139


>U56860-2|AAA98706.3|  225|Caenorhabditis elegans Defective pharynx
           development protein2 protein.
          Length = 225

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 52  QLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 192
           Q++ T     A  +K    KY S  E       L +SE + K WF+N
Sbjct: 139 QIRFTNEQTDALEHKFDSHKYLSPQERKKLAKSLSLSERQVKTWFQN 185


>AY766389-1|AAV34757.1|  170|Caenorhabditis elegans PHA-2 protein.
          Length = 170

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 52  QLKITKNGFFARRYKCVVSKYASQ*EEHNRENRLEISESERKLWFKN 192
           Q++ T     A  +K    KY S  E       L +SE + K WF+N
Sbjct: 84  QIRFTNEQTDALEHKFDSHKYLSPQERKKLAKSLSLSERQVKTWFQN 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,336,107
Number of Sequences: 27780
Number of extensions: 337798
Number of successful extensions: 704
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)