Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c14
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08660.1 68416.m01006 phototropic-responsive protein, putativ...    25   4.2  
At1g19980.1 68414.m02503 cytomatrix protein-related contains wea...    28   4.9  
At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule ubiq...    28   6.4  
At4g13820.1 68417.m02141 disease resistance family protein / LRR...    27   8.5  
At2g13680.1 68415.m01508 glycosyl transferase family 48 protein ...    27   8.5  

>At3g08660.1 68416.m01006 phototropic-responsive protein, putative
           contains similarity to root phototropism RPT2
           [Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal
           transducer of phototropic response PMID:10662859
          Length = 582

 Score = 25.4 bits (53), Expect(2) = 4.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 457 SDNPGQHSEALKVDKILKIF 516
           SD+ GQHS  LKV +I+  +
Sbjct: 354 SDSTGQHSSLLKVGRIMDAY 373



 Score = 21.4 bits (43), Expect(2) = 4.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 385 LDRRVAHQ*KRLDKANLLTPGSSRSDN 465
           L+RR+ HQ +     +LL P     D+
Sbjct: 299 LERRIGHQLETASLDDLLIPSVQNEDS 325


>At1g19980.1 68414.m02503 cytomatrix protein-related contains weak
           similarity to CAST1 [Rattus norvegicus]
           gi|22138113|gb|AAL07517
          Length = 342

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 566 KNKKGGLSIYFSWKMTPKIFKILSTFKASLCCPGLSDLD 450
           +N +  LS+      T K+F++L T+K++L C GL + D
Sbjct: 60  RNYEDQLSLMMKEIETTKMFQLLETYKSNLLC-GLKEKD 97


>At3g24800.1 68416.m03112 PRT1 protein (PRT1) E3, N-end rule
           ubiquitin ligase, contains two RING finger domain;
           identical to PRT1 [Arabidopsis thaliana] GI:3319884
          Length = 410

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -3

Query: 496 RPLKLHC---VVPGCLISMIQVSKDSPCQDASIGVPHACPGV 380
           RP+ L+C      GC++ M + S+   CQ+ ++  P   P V
Sbjct: 201 RPVVLNCGHVYCEGCVVDMAEESEKIKCQECNVCDPRGFPKV 242


>At4g13820.1 68417.m02141 disease resistance family protein / LRR
           family protein contains leucine rich-repeat (LRR)
           domains Pfam:PF00560, INTERPRO:IPR001611; similar to
           disease resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 719

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 366 SVARGFQKFRITLAVFHRKNPGYSPE 289
           S+ R F+KF  TL+V H +N   S E
Sbjct: 507 SIPRCFEKFNTTLSVLHLRNNNLSGE 532


>At2g13680.1 68415.m01508 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1923

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 299 YPGFFRWKTASVIRNF*K 352
           +PGF RWK   V+RN  K
Sbjct: 542 FPGFHRWKFTDVLRNILK 559


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,843
Number of Sequences: 28952
Number of extensions: 305969
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)