Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c13
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53158| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_10447| Best HMM Match : Dor1 (HMM E-Value=3.3) 30 1.6
SB_49691| Best HMM Match : E-MAP-115 (HMM E-Value=4.7) 29 2.8
SB_15063| Best HMM Match : Fez1 (HMM E-Value=0.17) 29 3.7
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13) 28 6.4
SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07) 28 6.4
SB_19730| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_53158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 447
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 225 NRLNNKKIRNYYLKKICILLNLNFKHVIESSFDKNHIVAKL-CDATRAKEWQTMSRER 395
N L + I N L+ +C L+L + H++ + HI + C AT+ +WQ SRER
Sbjct: 326 NDLVSDHIINNELRTLCGSLSLRYGHLMGLAAGVLHIARHVDCPATKILDWQAQSRER 383
>SB_10447| Best HMM Match : Dor1 (HMM E-Value=3.3)
Length = 466
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +3
Query: 234 NNKKIRNYYLKKICILLNLNFKHVIESSFDKNHIVAKLCDATRAKEWQTMSRERRLKNFN 413
N KKIR + L+ + N F + DKN ++ + D TR T+ + RLK+ N
Sbjct: 183 NEKKIRRFSLQARNLSKNDGFVEESMGNLDKNEVIKSVSDITR-----TVLEKPRLKSIN 237
>SB_49691| Best HMM Match : E-MAP-115 (HMM E-Value=4.7)
Length = 170
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +3
Query: 60 MDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYG 215
M+ +Q + +S + + T DEN+ DN+ E+ + C+ L + +G
Sbjct: 97 MEAMKQYVPLSNMGFITGTDEDENMPDNVDYKGERRRMAICEELEREIFFWG 148
>SB_15063| Best HMM Match : Fez1 (HMM E-Value=0.17)
Length = 444
Score = 29.1 bits (62), Expect = 3.7
Identities = 26/119 (21%), Positives = 50/119 (42%)
Frame = +3
Query: 291 NFKHVIESSFDKNHIVAKLCDATRAKEWQTMSRERRLKNFNLNINYDGPVKIFVAATAEQ 470
N++H++E +++C+ EW+ + +ER L ++D K F A +
Sbjct: 301 NYRHIVEQQESLIEDDSRMCE-----EWERLQQERALYE-KQKKSFDEERKNFTDAAVKL 354
Query: 471 KLLLKKTRDALLPFYKYISICKNGVMVRRDEKSRVFIVKNEQNIEYLKANKYYAFHSDS 647
KK + +YK + R KSR+F+ + E+ + K+ +DS
Sbjct: 355 GHERKKFEEERTAYYKQQLMIT--PQSRTSAKSRLFLFRGNLITEHPSSIKHRRLLADS 411
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 29.1 bits (62), Expect = 3.7
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +3
Query: 39 HRVDIINMDQFEQLINVSLLKSLIKTQID--ENVSDNI-KSMSEKLKRLECDNLTDSVEI 209
H+ + +++ Q L+ V L+ S ++T I+ V D KS E + ++ C E
Sbjct: 811 HQAETLSVIQSLILVFVKLMNSQLETTIEFLSGVPDPTGKSALENILKIWCAR---QPEF 867
Query: 210 YGIHDNRLNNKKIRN 254
YG++DN+++ + N
Sbjct: 868 YGVYDNKVSTLALCN 882
>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 471
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = -3
Query: 632 SVIFVGFEIFNILLIFNNKHATFFVASHHNTVFTNGNVFVKRQQSVTS 489
++I + I NI +I NN + N + N N+ +K S T+
Sbjct: 422 NIIIINNNIININIIINNNNIIINNIIIKNIIINNNNIIIKISSSTTT 469
>SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 429 DGPVKIFVAATAEQKLLLKKTRDALLPF-YKYISICKNGVMVRRDEKSRVFIVKNEQNIE 605
D + I + TA K + K F +K+I V++R+DE S +K+ Q++
Sbjct: 299 DNSIYISESLTANNKAIFKGALSFKKEFRFKFIWTVHGKVLIRKDEHSPAIQIKSLQHLA 358
Query: 606 YLKANK 623
L++ +
Sbjct: 359 DLRSEQ 364
>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
Length = 323
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = -3
Query: 659 KIINAIAMKSVIFVGFEIFNILLIFNNKHATFFVASHHNTVFTNGNVFV 513
+I NA M SVIF G + + +++ ++ +N++ T V +
Sbjct: 116 RIANAFMMSSVIFTGVSVLTLTTATVDRYLALYLHLSYNSIVTVQRVLI 164
>SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)
Length = 827
Score = 28.3 bits (60), Expect = 6.4
Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Frame = +3
Query: 69 FEQLINVSLLKSLIKTQIDENV-SDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKK 245
+E+L++ + I + +++ D++ S K+ + C + EIY DN+L ++
Sbjct: 457 YEELLSAHVQALPINERNGQHILRDSVTSPGSKVLTMYCKKQDNDKEIYNFKDNQLIIQR 516
Query: 246 IRNYYLKKICILLN---LNFKHVIESSFDKNHIVAKLCDAT 359
+++ ++ L F I SS +VA C T
Sbjct: 517 KTRQEVQESAFAMDSKELKFNMEITSSSPLASVVAGFCVVT 557
>SB_19730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 504 LPFYKYISICKNGVMVRRDEKSRVFI---VKNEQNIEYLKANKYYAFHSDSVDN 656
L + K +S +++ +K++ +I K +N+EY+K +YY+ D+ N
Sbjct: 151 LEYLKTLSPTVRDLLIEAGDKAKRYIDRMKKTGENVEYMKVAQYYSSALDTAMN 204
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,124,466
Number of Sequences: 59808
Number of extensions: 314491
Number of successful extensions: 981
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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