Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c13
(706 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein. 31 0.61
U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein. 31 0.61
U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family pro... 31 0.61
U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family pro... 31 0.61
AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein. 31 0.61
U29488-12|AAA68769.3| 617|Caenorhabditis elegans Hypothetical p... 30 1.9
Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical p... 29 4.3
Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical pr... 29 4.3
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe... 29 4.3
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe... 29 4.3
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty... 29 4.3
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 28 5.7
AL132943-3|CAB81974.1| 345|Caenorhabditis elegans Hypothetical ... 28 7.5
AF016417-3|AAB65281.1| 457|Caenorhabditis elegans Hypothetical ... 28 7.5
AC006673-4|AAF39930.1| 512|Caenorhabditis elegans Hypothetical ... 27 9.9
>U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +3
Query: 51 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 206
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192
>U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +3
Query: 51 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 206
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192
>U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family
protein 3, isoform b protein.
Length = 219
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +3
Query: 51 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 206
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192
>U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family
protein 3, isoform a protein.
Length = 233
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +3
Query: 51 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 206
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +S++
Sbjct: 158 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 206
>AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein.
Length = 219
Score = 31.5 bits (68), Expect = 0.61
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +3
Query: 51 IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 206
+++MD+ QL + L +T EN+ N+K++ EKL + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192
>U29488-12|AAA68769.3| 617|Caenorhabditis elegans Hypothetical
protein C56C10.1 protein.
Length = 617
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Frame = +3
Query: 198 SVEIYGIHDNRLNN---KKIRNYYLKKICILLNLNFKHVIESSFDKNHIVAKLCDATRAK 368
S+++ G+ D+ N ++ Y + + L NL VI + + HI + RA+
Sbjct: 421 SLKLDGVPDDTYNEFVEMYLQKYGYEHMFELQNLRNSRVI---YARRHIAHDRTISERAR 477
Query: 369 EWQTMSRERRLKNFNLNINYDGPVKI-FVAATAEQKLLLKKTRDAL 503
W+T++R+ R+ N ++ P + +V LL K D +
Sbjct: 478 TWETLARKFRIVKGNEPMDMSNPSDMSYVFGARISPLLCKIVEDTI 523
>Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.12 protein.
Length = 1080
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Frame = +3
Query: 30 PYTHRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEI 209
P TH D + ++ SL ++ +D ++M RL N++D ++
Sbjct: 197 PLTHEYDFWRFNHRVAIVLAETGGSLCYRKVANGFADIREAMKTPEGRL---NISDLFQL 253
Query: 210 YG-IHDNRLNNKKIRNYYLKKICILLNLNFKHVIESSFDKNHIVAKLCDATRAKEWQTM 383
+++ LN I+ +YL I F+ ++E + D + +A LC W M
Sbjct: 254 NPRLNETALNYNDIQMFYLAIIA-----PFQEIVEFNDDFDLSIADLCTTIDKSNWTNM 307
>Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.12 protein.
Length = 1080
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Frame = +3
Query: 30 PYTHRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEI 209
P TH D + ++ SL ++ +D ++M RL N++D ++
Sbjct: 197 PLTHEYDFWRFNHRVAIVLAETGGSLCYRKVANGFADIREAMKTPEGRL---NISDLFQL 253
Query: 210 YG-IHDNRLNNKKIRNYYLKKICILLNLNFKHVIESSFDKNHIVAKLCDATRAKEWQTM 383
+++ LN I+ +YL I F+ ++E + D + +A LC W M
Sbjct: 254 NPRLNETALNYNDIQMFYLAIIA-----PFQEIVEFNDDFDLSIADLCTTIDKSNWTNM 307
>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
protein 19,isoform a protein.
Length = 1783
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +3
Query: 105 LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYYLK--KICI 278
L ++ E D + S S++ + + CD ++D G++++R N Y++ +C
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353
Query: 279 LLNLN-FKHVIESSFD 323
L +N F VI +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369
>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective
protein 19,isoform b protein.
Length = 1877
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +3
Query: 105 LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYYLK--KICI 278
L ++ E D + S S++ + + CD ++D G++++R N Y++ +C
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353
Query: 279 LLNLN-FKHVIESSFD 323
L +N F VI +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369
>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
calcium channelalpha 1 subunit protein.
Length = 1783
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +3
Query: 105 LIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYYLK--KICI 278
L ++ E D + S S++ + + CD ++D G++++R N Y++ +C
Sbjct: 1295 LFRSATGEAWQDIMLSCSDR-EDVRCDPMSDDYHKGGLNESRCGNNFAYPYFISFFMLCS 1353
Query: 279 LLNLN-FKHVIESSFD 323
L +N F VI +FD
Sbjct: 1354 FLVINLFVAVIMDNFD 1369
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 306 IESSFDKNHIVAKLCDATRAKEWQTMS 386
+ES++DK H + + C T + +W T +
Sbjct: 131 VESAWDKTHQLFECCGVTNSSDWLTFT 157
>AL132943-3|CAB81974.1| 345|Caenorhabditis elegans Hypothetical
protein Y116F11B.6 protein.
Length = 345
Score = 27.9 bits (59), Expect = 7.5
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 111 KTQIDENVSDNIKSMSEKLKRLECDNLTDS-VEIYGIHDNRLNNKKI 248
K +I E+V +NIK KLK++E NL +S E+ H LN K++
Sbjct: 219 KIRIIEDV-ENIKKQDVKLKKIE-KNLKESRKELKEAHQEYLNRKEL 263
>AF016417-3|AAB65281.1| 457|Caenorhabditis elegans Hypothetical
protein F17A9.4 protein.
Length = 457
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3
Query: 180 CDNLTDSVEIYGIHDNRLNNKKIRNYYLK 266
CDNLT S +I G N N K +N +LK
Sbjct: 7 CDNLTVSSKILGEQLNFRNGKTAQNRFLK 35
>AC006673-4|AAF39930.1| 512|Caenorhabditis elegans Hypothetical
protein K09D9.12 protein.
Length = 512
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -3
Query: 578 KHATFFVASHHNTVFTNGNVFVKRQQSVTSFFK*QLLLRCGGH 450
KH T F +H N VF GNV + +T L L G H
Sbjct: 100 KHGTIFYGTHENKVF--GNVMIVYDYMITGNAPSPLHLLHGNH 140
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,137,123
Number of Sequences: 27780
Number of extensions: 251451
Number of successful extensions: 928
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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