Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c13
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13820.1 68418.m01615 telomeric DNA-binding protein 1 (TBP1) ...    29   4.0  
At2g36240.1 68415.m04448 pentatricopeptide (PPR) repeat-containi...    28   6.9  
At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein ...    28   6.9  
At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR...    27   9.2  
At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family pro...    27   9.2  

>At5g13820.1 68418.m01615 telomeric DNA-binding protein 1 (TBP1)
           identical to telomeric DNA-binding protein 1
           [Arabidopsis thaliana] gi|13641340|gb|AAK31590
          Length = 640

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 342 KLCDATRAKEWQTMSRERRLKNFNLNINYDG 434
           KLC      + +T+ R+RRL +  L +NYDG
Sbjct: 278 KLCYGYNPWKRETIHRKRRLSDKGLVVNYDG 308


>At2g36240.1 68415.m04448 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 379

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 276 ILLNLNFKHVIESSFDKNHIVAKLCDATRAKEWQTMSRE 392
           ++L+L  K V+ S FD   +V KLC   +A     M  E
Sbjct: 202 LVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMMEE 240


>At1g26610.1 68414.m03241 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = +3

Query: 108 IKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKK 245
           I+T ++EN +D+ +  ++KLK ++ +    S   YG+ +N   NK+
Sbjct: 28  IRTHMNENSADSDEDEADKLKMIDENGGQSS---YGLRENPKKNKR 70


>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1039

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = +3

Query: 138  DNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKKIRNYY-LKKICILLNLNFKHVIES 314
            DN K++     +L C N + +      HD       IR+   L  +C+      K+V E 
Sbjct: 855  DNCKNLQSLQDQLLCYNTSLAYLDLSNHDFERIPTSIRHLSSLNTLCLKNCKKLKYVEEL 914

Query: 315  SFDKNHIVAKLCDATRAKEWQTMSRERRLKNFNL 416
                NH+ A  CD     E  T+S    +K+ +L
Sbjct: 915  PLSLNHLYAHGCDYL---ENVTLSPNHTIKHLDL 945


>At2g19920.1 68415.m06036 RNA-dependent RNA polymerase family
           protein contains Pfam domain, PF05183: RNA dependent RNA
           polymerase
          Length = 927

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +3

Query: 507 PFYKYISICKNGVMVRRDEKSRVFIVKNEQNIEYLKAN-----KYYAFHSDSVDNFEFEN 671
           P+ KY  I KNG+MV    + + F+ K+    E  K N     K Y   + S  + + EN
Sbjct: 267 PYSKYKEIAKNGIMVGL-RRYQFFVFKDGGKAEKKKRNSTKQVKCYFIRTGSTASSDMEN 325


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,826,192
Number of Sequences: 28952
Number of extensions: 212276
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)