Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c10
         (615 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D563A7 Cluster: PREDICTED: similar to CG17540-PA...    70   5e-11
UniRef50_Q5W010 Cluster: RNA binding motif protein 17; n=5; Euar...    42   0.009
UniRef50_Q96I25 Cluster: Splicing factor 45; n=39; Euteleostomi|...    42   0.009
UniRef50_Q6AS97 Cluster: Putative uncharacterized protein; n=1; ...    35   1.3  
UniRef50_A0YHS2 Cluster: Chloramphenicol-sensitive protein RarD;...    34   2.3  
UniRef50_Q16KK2 Cluster: Putative uncharacterized protein; n=2; ...    34   3.1  
UniRef50_UPI000065FB47 Cluster: Tumor necrosis factor receptor s...    33   7.1  

>UniRef50_UPI0000D563A7 Cluster: PREDICTED: similar to CG17540-PA.3;
           n=3; Endopterygota|Rep: PREDICTED: similar to
           CG17540-PA.3 - Tribolium castaneum
          Length = 387

 Score = 69.7 bits (163), Expect = 5e-11
 Identities = 38/68 (55%), Positives = 44/68 (64%)
 Frame = +2

Query: 314 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 493
           MSLYDDLD +K R TEKV+ WSSGI           A VTQPKRE  R+ +  L PVIDL
Sbjct: 1   MSLYDDLD-VKARATEKVSGWSSGIKLLQSQLQLKKATVTQPKREQQRKVS--LAPVIDL 57

Query: 494 KSKSXDEE 517
           KSK  D++
Sbjct: 58  KSKRDDDD 65


>UniRef50_Q5W010 Cluster: RNA binding motif protein 17; n=5;
           Euarchontoglires|Rep: RNA binding motif protein 17 -
           Homo sapiens (Human)
          Length = 221

 Score = 42.3 bits (95), Expect = 0.009
 Identities = 27/75 (36%), Positives = 37/75 (49%)
 Frame = +2

Query: 314 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 493
           MSLYDDL  ++T +  K   WS              AA+TQ K +  ++ST VL PVIDL
Sbjct: 1   MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57

Query: 494 KSKSXDEEESTLVVP 538
           K     ++   +  P
Sbjct: 58  KRGGSSDDRQIVDTP 72


>UniRef50_Q96I25 Cluster: Splicing factor 45; n=39;
           Euteleostomi|Rep: Splicing factor 45 - Homo sapiens
           (Human)
          Length = 401

 Score = 42.3 bits (95), Expect = 0.009
 Identities = 27/75 (36%), Positives = 37/75 (49%)
 Frame = +2

Query: 314 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 493
           MSLYDDL  ++T +  K   WS              AA+TQ K +  ++ST VL PVIDL
Sbjct: 1   MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57

Query: 494 KSKSXDEEESTLVVP 538
           K     ++   +  P
Sbjct: 58  KRGGSSDDRQIVDTP 72


>UniRef50_Q6AS97 Cluster: Putative uncharacterized protein; n=1;
           Desulfotalea psychrophila|Rep: Putative uncharacterized
           protein - Desulfotalea psychrophila
          Length = 387

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 132 LVKITL*RKQIISFNQQSGLIILDIYVVTWLWCLY 236
           + K  L R  ++  N++SGL++L I V  WL+C+Y
Sbjct: 64  VAKTKLERDSLLFVNKRSGLVVLIIQVAFWLFCIY 98


>UniRef50_A0YHS2 Cluster: Chloramphenicol-sensitive protein RarD;
           n=1; marine gamma proteobacterium HTCC2143|Rep:
           Chloramphenicol-sensitive protein RarD - marine gamma
           proteobacterium HTCC2143
          Length = 299

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 205 MSRMMRPLCWLKLMICFLHNVIFTSFLYFYLKPQLVSSVAHDFGFFKIL 59
           +   +RPL W+ + I F    IF   +YF   P +  S+A  FGF+ ++
Sbjct: 121 LGERLRPLQWVAIFIAFFG--IFFQLMYFGKIPWIALSLAFSFGFYGLI 167


>UniRef50_Q16KK2 Cluster: Putative uncharacterized protein; n=2;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 478

 Score = 33.9 bits (74), Expect = 3.1
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 169 LMICFLHNVIFTSFLYFY-LKPQLVSSVAHDFGFFKILNXLIIFMYYL 29
           L+ CF H+   T +++F+   P   S++ H F F  +L  + IF Y L
Sbjct: 293 LIACFAHSFTMTLWIFFFDRSPFCSSTMLHSFLFSLVLGVVFIFTYIL 340


>UniRef50_UPI000065FB47 Cluster: Tumor necrosis factor receptor
           superfamily member 6B precursor (Decoy receptor for Fas
           ligand) (Decoy receptor 3) (DcR3) (M68).; n=1; Takifugu
           rubripes|Rep: Tumor necrosis factor receptor superfamily
           member 6B precursor (Decoy receptor for Fas ligand)
           (Decoy receptor 3) (DcR3) (M68). - Takifugu rubripes
          Length = 651

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 233 QAPKPSNHINVENDETTLLVKT--NDLFPSQCYFY*FSIFLFKTSTCI*CC 87
           + PKP N++N+E   T ++VK   N LFP         ++ F+   C   C
Sbjct: 304 EEPKPFNYVNIEQLLTVIIVKAVRNQLFPHNNTQTFICVYWFRNPKCFPVC 354


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 512,753,075
Number of Sequences: 1657284
Number of extensions: 8568604
Number of successful extensions: 19317
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19308
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)