Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c10
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   2.8  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    27   2.8  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.0  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   6.6  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   6.6  

>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 109 PQLVSSVAHDFGFFKILNXLIIFMYYLFHLHKN 11
           P+ V     D G F +L  L  F   +F LHKN
Sbjct: 110 PKAVDDATADVGIFLMLGALRGFNQGIFELHKN 142


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = -3

Query: 145 VIFTSFLYFYLKPQLVSSVAHDFGFF----KILNXLIIFMYYLFHL 20
           V+F + +  + +P+L++ + H+ G +     ++N +I +   LFHL
Sbjct: 312 VLFDTLVKNHTEPELIAILGHELGHWYMSHNLINTIIDYGMSLFHL 357


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 153 RKQIISFNQQSGLIILDIYVVTWLWCLYGT 242
           R  +IS  + + LII   +++ W W +YGT
Sbjct: 548 RASVIS--KVAALIITAAFIILWPWPMYGT 575


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
 Frame = +2

Query: 434 QPKR-EALRRST--QVLTPVIDLKSKSXDE----EESTLVVPRFSLK 553
           QP   E+L ++T  Q+ TP+ ++K+   D+    EES LV P    K
Sbjct: 435 QPNNPESLAQTTLLQISTPISNIKANGKDDEEKKEESDLVTPSVKFK 481


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 338  YLSRHKETSLMTGLLRFTKC 279
            Y S  KE SL+TG L+F  C
Sbjct: 1016 YASELKENSLLTGELKFGDC 1035


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,214,313
Number of Sequences: 5004
Number of extensions: 39416
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)