Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c10
         (615 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1157 + 24765719-24766544,24766569-24766637,24767031-247671...    27   8.9  
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820...    27   8.9  

>08_02_1157 +
           24765719-24766544,24766569-24766637,24767031-24767180,
           24767296-24768503
          Length = 750

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 486 MTGVSTCVERRKASRLGCVT--AAFFSCNC 403
           M G S+CVE +K S  GC++     ++C C
Sbjct: 254 MLGNSSCVEAKKLSDFGCLSDNRRGYACKC 283


>02_05_0300 +
           27681204-27681656,27681745-27681840,27681933-27682022,
           27682126-27682227,27682310-27682456,27683608-27683748,
           27683749-27683808,27685133-27685230,27685308-27685410,
           27685954-27686037
          Length = 457

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 379 RPCRYFFCGPCFY 341
           RPCRYF  G C Y
Sbjct: 112 RPCRYFLAGDCSY 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,336,800
Number of Sequences: 37544
Number of extensions: 217984
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)