Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c10
         (615 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC039322-1|AAH39322.1|  401|Homo sapiens RBM17 protein protein.        42   0.001
BC007871-1|AAH07871.1|  401|Homo sapiens RNA binding motif prote...    42   0.001
AL157395-8|CAH73602.1|  401|Homo sapiens RNA binding motif prote...    42   0.001
AL157395-7|CAH73601.1|  221|Homo sapiens RNA binding motif prote...    42   0.001
AL157395-6|CAH73600.1|  212|Homo sapiens RNA binding motif prote...    42   0.001
AF542550-1|AAQ09533.1|  401|Homo sapiens unknown protein.              42   0.001
BC009064-1|AAH09064.1|  369|Homo sapiens RBM17 protein protein.        30   5.6  

>BC039322-1|AAH39322.1|  401|Homo sapiens RBM17 protein protein.
          Length = 401

 Score = 42.3 bits (95), Expect = 0.001
 Identities = 27/75 (36%), Positives = 37/75 (49%)
 Frame = +2

Query: 314 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 493
           MSLYDDL  ++T +  K   WS              AA+TQ K +  ++ST VL PVIDL
Sbjct: 1   MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57

Query: 494 KSKSXDEEESTLVVP 538
           K     ++   +  P
Sbjct: 58  KRGGSSDDRQIVDTP 72


>BC007871-1|AAH07871.1|  401|Homo sapiens RNA binding motif protein
           17 protein.
          Length = 401

 Score = 42.3 bits (95), Expect = 0.001
 Identities = 27/75 (36%), Positives = 37/75 (49%)
 Frame = +2

Query: 314 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 493
           MSLYDDL  ++T +  K   WS              AA+TQ K +  ++ST VL PVIDL
Sbjct: 1   MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57

Query: 494 KSKSXDEEESTLVVP 538
           K     ++   +  P
Sbjct: 58  KRGGSSDDRQIVDTP 72


>AL157395-8|CAH73602.1|  401|Homo sapiens RNA binding motif protein
           17 protein.
          Length = 401

 Score = 42.3 bits (95), Expect = 0.001
 Identities = 27/75 (36%), Positives = 37/75 (49%)
 Frame = +2

Query: 314 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 493
           MSLYDDL  ++T +  K   WS              AA+TQ K +  ++ST VL PVIDL
Sbjct: 1   MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57

Query: 494 KSKSXDEEESTLVVP 538
           K     ++   +  P
Sbjct: 58  KRGGSSDDRQIVDTP 72


>AL157395-7|CAH73601.1|  221|Homo sapiens RNA binding motif protein
           17 protein.
          Length = 221

 Score = 42.3 bits (95), Expect = 0.001
 Identities = 27/75 (36%), Positives = 37/75 (49%)
 Frame = +2

Query: 314 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 493
           MSLYDDL  ++T +  K   WS              AA+TQ K +  ++ST VL PVIDL
Sbjct: 1   MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57

Query: 494 KSKSXDEEESTLVVP 538
           K     ++   +  P
Sbjct: 58  KRGGSSDDRQIVDTP 72


>AL157395-6|CAH73600.1|  212|Homo sapiens RNA binding motif protein
           17 protein.
          Length = 212

 Score = 42.3 bits (95), Expect = 0.001
 Identities = 27/75 (36%), Positives = 37/75 (49%)
 Frame = +2

Query: 314 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 493
           MSLYDDL  ++T +  K   WS              AA+TQ K +  ++ST VL PVIDL
Sbjct: 1   MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57

Query: 494 KSKSXDEEESTLVVP 538
           K     ++   +  P
Sbjct: 58  KRGGSSDDRQIVDTP 72


>AF542550-1|AAQ09533.1|  401|Homo sapiens unknown protein.
          Length = 401

 Score = 42.3 bits (95), Expect = 0.001
 Identities = 27/75 (36%), Positives = 37/75 (49%)
 Frame = +2

Query: 314 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 493
           MSLYDDL  ++T +  K   WS              AA+TQ K +  ++ST VL PVIDL
Sbjct: 1   MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57

Query: 494 KSKSXDEEESTLVVP 538
           K     ++   +  P
Sbjct: 58  KRGGSSDDRQIVDTP 72


>BC009064-1|AAH09064.1|  369|Homo sapiens RBM17 protein protein.
          Length = 369

 Score = 30.3 bits (65), Expect = 5.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 422 AAVTQPKREALRRSTQVLTPVIDLKSKSXDEEESTLVVP 538
           AA+TQ K +  ++ST VL PVIDLK     ++   +  P
Sbjct: 3   AALTQAKSQRTKQST-VLAPVIDLKRGGSSDDRQIVDTP 40


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,293,168
Number of Sequences: 237096
Number of extensions: 1249063
Number of successful extensions: 1769
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1769
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)