Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c08
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    29   0.41 
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    28   1.2  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    23   1.3  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    27   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.6  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    27   2.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.2  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    27   2.9  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    26   3.8  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    25   6.6  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   6.6  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   6.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.8  
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    25   8.8  
SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex ...    25   8.8  
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    25   8.8  

>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 208 TKCIEWRPNDLITIDSDTQDQ 270
           +KC++W P D IT+DS  Q +
Sbjct: 792 SKCLKWDPKDRITVDSALQHE 812


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 152 GRPTLVFRSTPSCVNKSLYWS 90
           G  TLVF STP+  + S YWS
Sbjct: 333 GAATLVFESTPAYPDYSRYWS 353


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 23.0 bits (47), Expect(2) = 1.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 30  NG*LYRHHHHH 62
           NG  + HHHHH
Sbjct: 739 NGGHHHHHHHH 749



 Score = 23.0 bits (47), Expect(2) = 1.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 42  YRHHHHHVYEFG 77
           + HHHHH Y  G
Sbjct: 742 HHHHHHHHYITG 753


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 498 IGHEYLGVSVLEIERILPDSRFRRELHLLVVTGDA 394
           +G + LG+S+ +  R++ DS +R  +  + V GDA
Sbjct: 324 LGLDKLGISMDKSNRVIMDSEYRTNIPHIRVIGDA 358


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 551  WWLNLTTSPKS*INRSPNXIYL 616
            WWLN T  PKS +  + + +Y+
Sbjct: 1375 WWLNSTAVPKSVVQMNDSVLYM 1396


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 194 CTMQSIPIELKSETGRPTLVFRSTPSCVNKSLYWSCNSSPELVDMMMMMT 45
           C+ Q+IPI    ET     ++ S   C +++++   N  P+L+  +   T
Sbjct: 145 CSSQAIPIVTAYETLGEDGIYTSLDECKSRAIFTDPNLIPKLLGPLKQST 194


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/98 (18%), Positives = 37/98 (37%)
 Frame = +1

Query: 148 RPVSDFNSIGMLCIVQNADGTKCIEWRPNDLITIDSDTQDQEWAVVNTVGRRQRTLSGNI 327
           R V + + +G   +         I W PN+   + +   D    ++ T   RQ T+  NI
Sbjct: 196 RQVLNLSYLGAAGVSAATGAVNSIAWHPNNATRLATAIDDNRNPIILTWDLRQPTVPQNI 255

Query: 328 TSDYANLRARIIKIPLDDLKTFRITRNNQQMQFSTKPG 441
            + +      +   P D        ++ + M ++ + G
Sbjct: 256 LTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVWNVETG 293


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 391 FRITRNNQQMQFSTKPGVWQNTFYFQHGNAEIFVAYLKNHLKTAKTR 531
           F+IT    Q++  ++   W +       +     AYLK H+K+ K R
Sbjct: 195 FQITNRATQLRLYSRRRFWNDCSILITNSLGTLNAYLKQHVKSYKQR 241


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 85  LHDQYKDLFTQDGVLLKTSVGRPVSDFNSIGMLCIVQNADG 207
           L +Q KD+ +QDGV    +V R     N +  +C +   DG
Sbjct: 165 LLNQLKDILSQDGVFYMVAVAR-----NKLHSICEILQKDG 200


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 398 SPVTTNKCSSRRNRESGRIRSISNTETPRYSWPI*RITLRPLKQDT 535
           SP    K + RR   S   +   NT TP+ S  + ++  R L Q T
Sbjct: 571 SPALLKKTNKRRELPSSLTKK--NTRTPQRSKEVKKVPARKLSQST 614


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = +3

Query: 324 HNIGLRESSGAHHKNTP------RRFKNVSHHP*QPTNAVLDETGSLAEYVLFPTRKRRD 485
           H IG   SS  + K+T          K+  H      N  +D+   LAEY    T+ R+D
Sbjct: 549 HQIGAEASSSNNVKSTELLEGLANARKSALHEIFVKINLKIDDFLGLAEYDWTTTQVRKD 608

Query: 486 IRGLSKE 506
           + G  +E
Sbjct: 609 VSGYLQE 615


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 33  G*LYRHHHHH 62
           G L+RHHHHH
Sbjct: 476 GSLHRHHHHH 485


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 328  TSDYANLRARIIKIPLDDLKTFRIT-RNNQQMQFSTKPGVWQNTFYFQHGNAEIFVAYLK 504
            +S+YA L +  I++ +DD   +R+T     +   +TKP +    F F     ++F+  + 
Sbjct: 1789 SSNYAELFSNQIQLFVDDTNVYRVTIHKTFEGNLTTKP-INGAIFIFNPRTGQLFLKVIH 1847

Query: 505  NHLKTAKTR 531
              +   + R
Sbjct: 1848 TSVWAGQKR 1856


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 301 RQRTLSGNITSDYANLRARIIKIPLDDLKT 390
           R  TL   + S+Y NL A +    L+DLKT
Sbjct: 168 RDCTLDPALGSEYTNLYAFVDDTALEDLKT 197


>SPBC18E5.02c ||SPBC29A3.20c|serine palmitoyltransferase complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 94  QYKDLFTQDGVLLKTSV--GRPVSDFNSIGMLCIVQNADGTKC 216
           + K +   + V L T +  GRP+++F S   L + +N   T+C
Sbjct: 107 ELKSIPVLESVHLHTKLIDGRPITNFASFNFLDLAENKHITEC 149


>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 138

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +1

Query: 337 YANLRARIIKIPLDDLKTFRITRNNQQMQFSTKPGVWQN--TFYFQHG 474
           Y+ +R       L ++   RIT + +++  S K  ++QN  T Y  HG
Sbjct: 72  YSQVRGPKAARVLSEILRNRITESKEKLSLSQKEKLFQNLPTVYILHG 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,809
Number of Sequences: 5004
Number of extensions: 55563
Number of successful extensions: 182
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)