Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c08
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600... 33 0.24
02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938... 31 0.73
01_05_0200 - 19196606-19197304 25 4.9
11_04_0375 + 16933688-16933703,16936291-16937063 28 5.2
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 28 5.2
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973... 28 5.2
12_01_0988 - 10039187-10039243,10039356-10039649,10039838-100402... 28 6.8
07_01_1173 + 11092482-11093465,11093552-11093914 28 6.8
06_03_0149 + 17260632-17260647,17263368-17264071 28 6.8
02_05_0998 + 33391021-33391266,33391354-33391502,33391600-333916... 28 6.8
01_06_1067 + 34258036-34258051,34264808-34265679 28 6.8
01_06_0959 - 33362810-33363125,33363309-33363475,33363583-333644... 28 6.8
03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007... 27 9.0
01_05_0197 + 19143582-19143618,19143814-19144523 27 9.0
01_01_0948 - 7454656-7455090 27 9.0
>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
28960097-28960424,28960524-28960661,28960765-28961020,
28961529-28961626,28963104-28963367,28964395-28964584
Length = 1067
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 306 TDPKR*HNIGLRESSG--AHHKNTPRRFKNVSHHP*QPTNAVLDETGSLAEYVLFPTRKR 479
T P + H+I + ESS HH N + ++ HHP +P + T ++ T K
Sbjct: 962 THPVQEHSISIEESSDHHEHHHNEEHKAEDCGHHP-KPKDCAPPPTDCISRNCCSNTSKG 1020
Query: 480 RDI 488
+DI
Sbjct: 1021 KDI 1023
>02_05_0483 -
29391929-29392256,29393048-29393148,29393640-29393834,
29394124-29394240,29394376-29394447,29394840-29394950,
29395029-29395127,29395991-29396047,29396607-29397008,
29397249-29397303,29397725-29397809,29398023-29398130,
29398229-29398295,29398717-29398875,29399277-29399405
Length = 694
Score = 31.1 bits (67), Expect = 0.73
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Frame = +1
Query: 337 YANLRARIIKIPLDDLKTFRI---TRNNQQMQFSTKPGVWQNTFYFQHGNAEIFVAYLKN 507
Y NL I +PL D++ R T + + G+ FYF +G A LK
Sbjct: 119 YRNLYT-IKALPLSDVRFIRKHTPTFGFEYIIIVLSSGLAFPPFYFYNGGLRELFATLKK 177
Query: 508 HLKTAKTRHDRNTYMVVEPNDESQVLNKSFAELXI 612
H+ ++ D N ++V ND L KS + L +
Sbjct: 178 HVFIIRSDDDPNVFLV---NDFQDPLQKSLSSLEL 209
>01_05_0200 - 19196606-19197304
Length = 232
Score = 24.6 bits (51), Expect(2) = 4.9
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 39 LYRHHHHH 62
LY HHHHH
Sbjct: 219 LYHHHHHH 226
Score = 22.2 bits (45), Expect(2) = 4.9
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3
Query: 48 HHHHHVYE 71
HHHHH Y+
Sbjct: 221 HHHHHHYK 228
>11_04_0375 + 16933688-16933703,16936291-16937063
Length = 262
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 169 SIGMLCIVQNADGTKCIEWRPNDLITI 249
++G L +Q DG+ IEWR N LI +
Sbjct: 6 ALGQLKAIQLLDGSNYIEWRNNVLINL 32
>09_02_0077 +
3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 146 PTLVFRSTPSCVNKSLYWSCNSSPELVDMMMMMTIQSP 33
P+L+ ++ S +N S WS + EL+ ++ M+ +P
Sbjct: 276 PSLMQKAVDSIINGSTKWSTEFAEELLSLVSMLVSSTP 313
>03_02_0599 -
9730204-9730314,9730766-9731549,9731631-9732051,
9732139-9732385,9733730-9733921,9734071-9734204,
9734316-9734477,9736162-9736200,9737507-9737825
Length = 802
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 42 YRHHHHHVYEFGR*ITRPVQRLVHARRGTSKDQCRSAGL 158
+ HHHHV+ + +T+ Q+ RG+S QC S+ +
Sbjct: 634 FMQHHHHVHYYVHVMTQQ-QQQPSIERGSSDAQCGSSNV 671
>12_01_0988 -
10039187-10039243,10039356-10039649,10039838-10040202,
10042916-10042931
Length = 243
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 169 SIGMLCIVQNADGTKCIEWRPNDLITI 249
++G L +Q DG+ +EWR N LI +
Sbjct: 6 ALGQLKAIQLLDGSNYVEWRNNVLINL 32
>07_01_1173 + 11092482-11093465,11093552-11093914
Length = 448
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 49 IIIIMSTSSGDELHDQYKDLFTQDGVLLKTSVGRPVSDFNSIGML 183
+ + +S DE+ D+ +DL +DG LL+ +G V+ SI +L
Sbjct: 213 LTVSVSLRRRDEVGDELQDLAVEDGPLLERLLGHDVNWGPSIHVL 257
>06_03_0149 + 17260632-17260647,17263368-17264071
Length = 239
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 169 SIGMLCIVQNADGTKCIEWRPNDLITI 249
++G L +Q DG+ +EWR N LI +
Sbjct: 6 ALGQLKAIQLLDGSNYVEWRNNVLINL 32
>02_05_0998 +
33391021-33391266,33391354-33391502,33391600-33391681,
33391808-33392223,33393659-33393854,33393932-33394074,
33394153-33394327,33394450-33394503,33394701-33394877,
33395832-33395944,33396083-33396265,33396570-33396632,
33396742-33396894,33396922-33396994,33397076-33397206,
33397285-33397420,33397504-33397581,33398146-33398262,
33398473-33398535,33398619-33398720
Length = 949
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -1
Query: 209 VPSAFCTMQSIPIELKSETGRPTLV-FRSTPSCVNKSLYWSCNSSPELVDMMMMMTIQSP 33
+P+ I E GRP TP + SL +S ++ +L ++++TIQ+
Sbjct: 670 IPARTIAENGFAITGHCEAGRPCCQSVLCTPFATSDSLTFSLSAGFDLSHFLVLVTIQAT 729
Query: 32 VDQS 21
+D+S
Sbjct: 730 LDES 733
>01_06_1067 + 34258036-34258051,34264808-34265679
Length = 295
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 172 IGMLCIVQNADGTKCIEWRPNDLITI 249
+G L +Q DG+ +EWR N LI +
Sbjct: 5 VGQLKAIQLLDGSNYVEWRNNVLINL 30
>01_06_0959 -
33362810-33363125,33363309-33363475,33363583-33364410,
33364483-33364719,33365455-33365871,33365951-33366412,
33367197-33367382
Length = 870
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 119 SCVNKSLYWSCNSSPEL-VDMMMMMTIQSPVDQSTVAKLK 3
S VN + +WS NS+P L ++ ++ PV S V++++
Sbjct: 487 SSVNHTAHWSQNSAPSLSLNQKILSVTGPPVTLSVVSRIR 526
>03_06_0603 +
34999083-34999703,35000092-35000177,35000400-35000796,
35000906-35001154,35001522-35001749,35002524-35002973,
35003848-35003961,35004171-35004216,35004408-35004574
Length = 785
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 471 VLEIERILPDSRFRRELHLLVVTGDAKRF 385
VL+++ + PD+ RELH +V GD K+F
Sbjct: 198 VLDLKEV-PDAVNGRELHFSMVDGDFKKF 225
>01_05_0197 + 19143582-19143618,19143814-19144523
Length = 248
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +1
Query: 169 SIGMLCIVQNADGTKCIEWRPNDLITI----DSDTQDQEWAVVNTVGRRQRTLSGNITSD 336
++G L +Q DG+ +EWR N I + D + Q +N +G L
Sbjct: 13 ALGQLKAIQLLDGSNYVEWRNNVFINLAIREDPPEEPQPAEELNIIGEEYDNLMWAYNKK 72
Query: 337 YAN 345
AN
Sbjct: 73 LAN 75
>01_01_0948 - 7454656-7455090
Length = 144
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -1
Query: 260 VSESMVIKSFGRHSMHLVPSAFCTMQSIPIELKSETGRPTLVFRST 123
+S+ V S RH++ L P+ + + E G+PTL FR T
Sbjct: 56 LSQYHVCSSVIRHALSLPPTTLELHKGQLVHEHDEKGQPTLEFRET 101
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,593,411
Number of Sequences: 37544
Number of extensions: 360455
Number of successful extensions: 1145
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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