Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c08
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 33 0.19
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 25 0.61
SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07) 31 0.75
SB_35757| Best HMM Match : Extensin_2 (HMM E-Value=4.7) 30 1.7
SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32) 29 3.0
SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_57721| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_22705| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_12735| Best HMM Match : PT (HMM E-Value=0.36) 29 3.0
SB_13158| Best HMM Match : PAN (HMM E-Value=9.4e-06) 28 5.3
SB_12274| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_21208| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 28 7.0
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.6
SB_19660| Best HMM Match : ATP-synt_8 (HMM E-Value=3.2) 23 8.7
SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12) 27 9.2
SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_45900| Best HMM Match : Chordopox_A13L (HMM E-Value=7.4) 27 9.2
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 33.1 bits (72), Expect = 0.19
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +3
Query: 45 RHHHHHVYEFGR*ITRPVQRLVHARRGTSKDQCRSAGLRFQLNRDALHCTERRRN*MHRM 224
R H H R + ++R S+ + RS+ L R + R R+ R
Sbjct: 273 RKHRHRSRSSSLSSRRRSKHKRKSKRDRSRSRDRSSSKSKSLRRSKKYSRSRSRSSERRR 332
Query: 225 ATK-RLDHHRFRYSRSRMGRC*YRWSQTTDPKR*HNIG 335
++ R HR+R SRSR R +R S +T P R + G
Sbjct: 333 RSRSRSTEHRYR-SRSRSPRRKHRRSTSTSPSRRYRSG 369
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 25.4 bits (53), Expect(2) = 0.61
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 48 HHHHHVYEFGR*ITRP 95
HHHHH + + I RP
Sbjct: 249 HHHHHHHRYAMLINRP 264
Score = 24.6 bits (51), Expect(2) = 0.61
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 39 LYRHHHHH 62
LY HHHHH
Sbjct: 232 LYHHHHHH 239
>SB_50928| Best HMM Match : 7tm_2 (HMM E-Value=4.7e-07)
Length = 1127
Score = 31.1 bits (67), Expect = 0.75
Identities = 14/57 (24%), Positives = 29/57 (50%)
Frame = +1
Query: 265 DQEWAVVNTVGRRQRTLSGNITSDYANLRARIIKIPLDDLKTFRITRNNQQMQFSTK 435
D+ W+ + V R L+ ++TS+ A++I + +TR + +++STK
Sbjct: 517 DRHWSRASAVQTATRVLTSSVTSEKEGCFAQVITSGVSVPSALAVTRTSSHLRWSTK 573
>SB_35757| Best HMM Match : Extensin_2 (HMM E-Value=4.7)
Length = 211
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 86 YTTSTKTCSRKTGYF*RPVSVGRSPISTQSGCSALYRTP 202
Y + C+ T + PVSV SPIS + ++Y +P
Sbjct: 163 YNSPISVCNSLTSVYNSPVSVYNSPISVYNSSISVYNSP 201
>SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32)
Length = 584
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = -2
Query: 466 GNRTYSARLPVSSRTAFVGCYG*CETFLNRLGVFL*CAPEDSRNPMLCYRLGSVVCDQ 293
G+RT S P ++ +A G G E + +G E+ +PM CYR+ S V DQ
Sbjct: 331 GSRTGSPAAPTNAASASPGKSGGPEERQSPMGSENPNDSEERVDPMSCYRMMSTVRDQ 388
>SB_31651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 827
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 511 GDSLDRPRISRRF-RVGNRTYSARLPVSSRTAFVGC 407
G +L R + RF R GN T LPV S+TA GC
Sbjct: 13 GTALYSSRATTRFYRSGNATLGVILPVHSQTASGGC 48
>SB_57721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 413 WLLRVMRNVFKSSRGIFMMRARRFA*SDVMLPLRVRCLRPTVLTTAHS 270
W+ V+ + SRG F + RR A + +LP+ R L P +T HS
Sbjct: 110 WVFGVLSTAYSPSRGYFQLVPRRDA--ETLLPIIQRALLPG--STVHS 153
>SB_22705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 413 WLLRVMRNVFKSSRGIFMMRARRFA*SDVMLPLRVRCLRPTVLTTAHS 270
W+ V+ + SRG F + RR A + +LP+ R L P +T HS
Sbjct: 12 WVFGVLSTAYSPSRGYFQLVPRRDA--ETLLPIIQRALLPG--STVHS 55
>SB_19556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 413 WLLRVMRNVFKSSRGIFMMRARRFA*SDVMLPLRVRCLRPTVLTTAHS 270
W+ V+ + SRG F + RR A + +LP+ R L P +T HS
Sbjct: 279 WVFGVLSTAYSPSRGYFQLVPRRDA--ETLLPIIQRALLPG--STVHS 322
>SB_12735| Best HMM Match : PT (HMM E-Value=0.36)
Length = 1148
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 345 SSGAHHKNTPRRFKNVSHHP*QPTNAVLDETGSLAEYVLFPTRKRRDIRGLSKESP 512
S G+ T +R K V QP+N V T + V PT +R + R + +P
Sbjct: 784 SLGSTDDRTHKRLKTVDEQNDQPSNEVRTPTNQRSNKVRTPTNQRSNKRSKKEITP 839
>SB_13158| Best HMM Match : PAN (HMM E-Value=9.4e-06)
Length = 329
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 17 LSTDQRVIVXXXXXXCL---RVREMNYTTSTKTC 109
++T+Q V V C+ R + +NY TS+KTC
Sbjct: 262 IATEQNVSVVDCVMFCMLDGRCQSLNYVTSSKTC 295
>SB_12274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 499 LKNHLKTAKTRHDRNTYMVVEPNDESQVLNKSF 597
+ H+ A + H R + + P D++QVLNK F
Sbjct: 10 INTHIFRANSHHSRG--VSISPRDKAQVLNKQF 40
>SB_21208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 484 SRRFRVGNRTYSARLPVSSRTAFVGC 407
+R +R GN T LPV S+TA GC
Sbjct: 23 TRFYRPGNATLGVILPVHSQTASGGC 48
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 27.9 bits (59), Expect = 7.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 42 YRHHHHHVYEFGR 80
+RHHHHH +E+ R
Sbjct: 337 HRHHHHHHHEYNR 349
>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 24.6 bits (51), Expect(2) = 7.6
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +3
Query: 42 YRHHHHHVYE 71
+RHHHHH +E
Sbjct: 281 HRHHHHHHHE 290
Score = 21.4 bits (43), Expect(2) = 7.6
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +3
Query: 39 LYRHHHHH 62
LY HHHH
Sbjct: 279 LYHRHHHH 286
>SB_19660| Best HMM Match : ATP-synt_8 (HMM E-Value=3.2)
Length = 178
Score = 23.4 bits (48), Expect(2) = 8.7
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3
Query: 45 RHHHHHVY 68
+HHHHH Y
Sbjct: 155 KHHHHHYY 162
Score = 22.6 bits (46), Expect(2) = 8.7
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = +3
Query: 48 HHHHHVYEF 74
HHHH+ Y F
Sbjct: 157 HHHHYYYRF 165
>SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12)
Length = 769
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = -3
Query: 534 VSCFSGLKVIL*IGHEYLGVSVLEIERILPD 442
+S SGL+V L G + LG++V+ ++ +LP+
Sbjct: 146 LSSHSGLQVHLCCGDQSLGMAVVSLQALLPE 176
>SB_53578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = -1
Query: 218 MHLVPSAFCTMQSIPIELKSETGRPTLVFRSTPSCVNKSLYWSCNSSPELVDMMMMMTI 42
+HL + CT +P+ + PTLV S+P+ + P +V+ ++ M +
Sbjct: 738 VHLQKVSQCTDCKMPVSNLARVFGPTLVGHSSPNVEPVDMLQQTKLQPRVVERLLAMPV 796
>SB_45900| Best HMM Match : Chordopox_A13L (HMM E-Value=7.4)
Length = 152
Score = 27.5 bits (58), Expect = 9.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 24 LING*LYRHHHHHVYEFG 77
++ G L +HHHHH ++ G
Sbjct: 21 IVTGHLQQHHHHHFHQCG 38
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,730,244
Number of Sequences: 59808
Number of extensions: 438088
Number of successful extensions: 1314
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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