Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c08
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical...    31   0.87 
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    30   1.2  
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    30   1.2  
AF025457-7|AAB70967.1|  431|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC199158-9|ABO33285.1|  229|Caenorhabditis elegans Hypothetical ...    29   3.5  
AC199158-5|ABO33288.1|  229|Caenorhabditis elegans Hypothetical ...    29   3.5  
U41553-5|AAO91694.1|  468|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF036701-2|AAB88369.2|  625|Caenorhabditis elegans Hypothetical ...    28   6.1  
AC093703-4|AAY55885.1|  345|Caenorhabditis elegans Hypothetical ...    28   6.1  

>AF040642-10|AAB94949.2|  576|Caenorhabditis elegans Hypothetical
           protein C50D2.1 protein.
          Length = 576

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -3

Query: 309 PLSATNGINNGPFLILS--IGID--GDQVVWSPFYAFSSVGVLYN 187
           P+S TNG + GPF+ L+  +G+D     V W+  +A   VGV  N
Sbjct: 478 PISVTNGYHVGPFMGLADRVGVDWLNGGVSWNKGFAVPFVGVGVN 522


>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 238  LITIDSDTQDQEWAVVNTVGRRQRTLSGNITSDYANLRARIIKIPLDDLKTFRITRNNQQ 417
            +I+I SD  D+E     +  ++Q  ++GN     A  R  +   P+D+ K  R  R+N +
Sbjct: 962  IISISSDESDKEEEPSCSNTKKQAKMAGNERKTIAPARRSVGDTPIDNEKEERECRSNTK 1021

Query: 418  MQ 423
             Q
Sbjct: 1022 KQ 1023



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 181  LCIVQNADGTKCIEWRPNDLITIDSDTQDQEWAVVNTVGRRQRTLSGNITSDYANLRARI 360
            L + +NA+  K        L++  SD  DQE     +   +QR ++ N     +  R RI
Sbjct: 904  LKVAENAENGKKASATKRRLVSSSSDESDQESRSTRSTTNKQRKIAEN-EKRASTPRVRI 962

Query: 361  IKIPLDD 381
            I I  D+
Sbjct: 963  ISISSDE 969


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 238  LITIDSDTQDQEWAVVNTVGRRQRTLSGNITSDYANLRARIIKIPLDDLKTFRITRNNQQ 417
            +I+I SD  D+E     +  ++Q  ++GN     A  R  +   P+D+ K  R  R+N +
Sbjct: 962  IISISSDESDKEEEPSCSNTKKQAKMAGNERKTIAPARRSVGDTPIDNEKEERECRSNTK 1021

Query: 418  MQ 423
             Q
Sbjct: 1022 KQ 1023



 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 181  LCIVQNADGTKCIEWRPNDLITIDSDTQDQEWAVVNTVGRRQRTLSGNITSDYANLRARI 360
            L + +NA+  K        L++  SD  DQE     +   +QR ++ N     +  R RI
Sbjct: 904  LKVAENAENGKKASATKRRLVSSSSDESDQESRSTRSTTNKQRKIAEN-EKRASTPRVRI 962

Query: 361  IKIPLDD 381
            I I  D+
Sbjct: 963  ISISSDE 969


>AF025457-7|AAB70967.1|  431|Caenorhabditis elegans Hypothetical
           protein C08E3.8 protein.
          Length = 431

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 27/107 (25%), Positives = 44/107 (41%)
 Frame = +1

Query: 217 IEWRPNDLITIDSDTQDQEWAVVNTVGRRQRTLSGNITSDYANLRARIIKIPLDDLKTFR 396
           I++RPND        Q+       T GRR RT   +   ++       I++ + DLK   
Sbjct: 136 IKYRPNDTAQYSPFRQEPTC----TCGRRIRTSDEDNRKEFFVTDEDYIELGVKDLKLIM 191

Query: 397 ITRNNQQMQFSTKPGVWQNTFYFQHGNAEIFVAYLKNHLKTAKTRHD 537
             +N Q  +F    G  Q+T       AEI     K+  +T +  ++
Sbjct: 192 ENQNVQLKKFQFSNGSNQDTQKKFIDRAEIAFKSAKSSTRTVEAHYN 238


>AC199158-9|ABO33285.1|  229|Caenorhabditis elegans Hypothetical
           protein AC8.12 protein.
          Length = 229

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 25/102 (24%), Positives = 43/102 (42%)
 Frame = +1

Query: 100 KDLFTQDGVLLKTSVGRPVSDFNSIGMLCIVQNADGTKCIEWRPNDLITIDSDTQDQEWA 279
           K L+ +  V+  T   RP+ D N +  L  +       C  + PN+ +        ++  
Sbjct: 77  KSLYARYSVINSTQYVRPIIDLNKVERLKPLMAR--MLCQLYMPNNAVHEAFSATSKDGI 134

Query: 280 VVNTVGRRQRTLSGNITSDYANLRARIIKIPLDDLKTFRITR 405
           VV+    R  T  G        +R+R+IK P +DL    ++R
Sbjct: 135 VVSQQQLRDLTRRG---CPDTLIRSRVIKHPTNDLTARDVSR 173


>AC199158-5|ABO33288.1|  229|Caenorhabditis elegans Hypothetical
           protein AC8.7 protein.
          Length = 229

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 25/102 (24%), Positives = 43/102 (42%)
 Frame = +1

Query: 100 KDLFTQDGVLLKTSVGRPVSDFNSIGMLCIVQNADGTKCIEWRPNDLITIDSDTQDQEWA 279
           K L+ +  V+  T   RP+ D N +  L  +       C  + PN+ +        ++  
Sbjct: 77  KSLYARYSVINSTQYVRPIIDLNKVERLKPLMAR--MLCQLYMPNNAVHEAFSATSKDGI 134

Query: 280 VVNTVGRRQRTLSGNITSDYANLRARIIKIPLDDLKTFRITR 405
           VV+    R  T  G        +R+R+IK P +DL    ++R
Sbjct: 135 VVSQQQLRDLTRRG---CPDTLIRSRVIKHPTNDLTARDVSR 173


>U41553-5|AAO91694.1|  468|Caenorhabditis elegans Hypothetical
           protein ZK1193.5a protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 22/79 (27%), Positives = 39/79 (49%)
 Frame = +1

Query: 79  DELHDQYKDLFTQDGVLLKTSVGRPVSDFNSIGMLCIVQNADGTKCIEWRPNDLITIDSD 258
           D + + +KD+ +   V+LK  + +P +D NS+  +  V+N      +   PN L  +D+ 
Sbjct: 82  DTVENLFKDISSH--VVLKI-LSKPSTDSNSVQCISEVKNKLLKAAVNKNPNVLTNVDN- 137

Query: 259 TQDQEWAVVNTVGRRQRTL 315
              Q   V+NT+     TL
Sbjct: 138 --QQVKDVINTIIAGDETL 154


>AF036701-2|AAB88369.2|  625|Caenorhabditis elegans Hypothetical
           protein ZC416.6 protein.
          Length = 625

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +1

Query: 457 FYFQH--GNAEIFVAYLKNHLKT 519
           FY +   G +EIF AYLK++LKT
Sbjct: 397 FYLEQKLGGSEIFEAYLKDYLKT 419


>AC093703-4|AAY55885.1|  345|Caenorhabditis elegans Hypothetical
           protein Y20F4.8 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 416 KCSSRRNRESGRIRSISNTETPRYSWPI*RI 508
           K +SR   E G++  +     PRY+WP+ RI
Sbjct: 150 KATSRLKPEIGQVVLVFQKLLPRYAWPMARI 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,318,337
Number of Sequences: 27780
Number of extensions: 316019
Number of successful extensions: 1123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)