Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c08
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 440 ESGRIRSISNTETPRYSWP 496
           +SG I +++  E PR  WP
Sbjct: 564 DSGSINTVAEWEPPRALWP 582


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 79  DELHDQYKDLFTQDGVLLK 135
           +++HD YKDL  + G L K
Sbjct: 77  NKIHDAYKDLNQRYGALCK 95


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 113 VNKSLYWSCNSSPELVDMMMMMTIQSPVDQSTV 15
           +N S+  S  +SP+   ++    + SP+D+  V
Sbjct: 629 LNNSMCTSTTTSPDKEHVLAHNDLMSPLDEPAV 661


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -2

Query: 382 NRLGVFL*CAPEDSRNPMLCYRLGSVVCD 296
           N L +++ CA +  R P   + +   +CD
Sbjct: 66  NGLVIWIFCAAKSLRTPSNMFVVNLAICD 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,956
Number of Sequences: 438
Number of extensions: 4015
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)