Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c08
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g52580.1 68418.m06529 hypothetical protein 32 0.35
At5g61730.1 68418.m07746 ABC transporter family protein contains... 28 5.7
At1g52800.1 68414.m05968 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 5.7
At5g03760.1 68418.m00339 glycosyl transferase family 2 protein s... 27 7.5
At1g79580.3 68414.m09279 no apical meristem (NAM) family protein... 23 8.6
At1g79580.2 68414.m09278 no apical meristem (NAM) family protein... 23 8.6
At1g79580.1 68414.m09277 no apical meristem (NAM) family protein... 23 8.6
At4g04130.1 68417.m00583 Ulp1 protease family protein contains P... 27 10.0
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ... 27 10.0
At3g47730.1 68416.m05200 ABC transporter family protein AbcA, Di... 27 10.0
At1g79360.1 68414.m09248 transporter-related low similarity to S... 27 10.0
>At5g52580.1 68418.m06529 hypothetical protein
Length = 327
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 460 YFQHGNAEIFVAYLKNHLKTAKTRHDRNTYMVVEPNDESQVLNKSFAELXI 612
YF +G F+A +K H+ A++ D+N ++V ND L ++ + L +
Sbjct: 111 YFYNGGVREFLAMVKQHVFLARSSEDQNVFIV---NDFQSPLQRTLSSLEL 158
>At5g61730.1 68418.m07746 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter
Length = 940
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 472 GNAEIFVAYLKNHLKTAKTRHDRNTYMVVEPNDESQVLNKSFAEL 606
G E + K LK T ++ V P+D+ Q+L FAEL
Sbjct: 763 GAPEPLKRFFKERLKVEPTEENKAFMTFVIPHDKEQLLKGFFAEL 807
>At1g52800.1 68414.m05968 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to GS-AOP loci [GI:16118889,
GI:16118887, GI:16118891, GI:16118893]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 314
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 169 SIGMLCIVQNADGTKCIEWRPNDLITIDSDTQDQEWAVVNTVGRRQRTLSGNITSDYANL 348
SI M Q+ D T ND+ ++ ++D EW + + ++G+I+ ++N
Sbjct: 180 SISMPAFPQHTDKTFLSILHQNDVNGLEVKSKDGEWISLQLPPKSYVVMAGDISMGWSND 239
Query: 349 RAR 357
R R
Sbjct: 240 RIR 242
>At5g03760.1 68418.m00339 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 533
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 478 RFRVGNRTYSARLPVSSRTAFVGCY 404
RFR G+R + L V FVGCY
Sbjct: 474 RFRFGDRIHVLELGVGMYLLFVGCY 498
>At1g79580.3 68414.m09279 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 23.4 bits (48), Expect(2) = 8.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3
Query: 51 HHHHVYEFGR*ITRPVQRLVH 113
HHHH + GR I P+ +
Sbjct: 217 HHHHHHHIGRQIHMPLHEFAN 237
Score = 22.2 bits (45), Expect(2) = 8.6
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +3
Query: 48 HHHHHVY 68
HHHHH Y
Sbjct: 181 HHHHHQY 187
>At1g79580.2 68414.m09278 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 23.4 bits (48), Expect(2) = 8.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3
Query: 51 HHHHVYEFGR*ITRPVQRLVH 113
HHHH + GR I P+ +
Sbjct: 217 HHHHHHHIGRQIHMPLHEFAN 237
Score = 22.2 bits (45), Expect(2) = 8.6
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +3
Query: 48 HHHHHVY 68
HHHHH Y
Sbjct: 181 HHHHHQY 187
>At1g79580.1 68414.m09277 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 23.4 bits (48), Expect(2) = 8.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3
Query: 51 HHHHVYEFGR*ITRPVQRLVH 113
HHHH + GR I P+ +
Sbjct: 217 HHHHHHHIGRQIHMPLHEFAN 237
Score = 22.2 bits (45), Expect(2) = 8.6
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +3
Query: 48 HHHHHVY 68
HHHHH Y
Sbjct: 181 HHHHHQY 187
>At4g04130.1 68417.m00583 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At2g11345, At3g42690
Length = 1200
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 324 VTA*GPLSATNGINNGPFLILSIGIDGDQVV 232
VT+ S+++G+N+GP + IG+DG V
Sbjct: 593 VTSLSSGSSSSGLNHGPAVDTDIGVDGGGTV 623
>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
similarity to Golgi-specific DHHC zinc figer protein
[Mus musculus] GI:21728103; contains Pfam profile
PF01529: DHHC zinc finger domain
Length = 477
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +3
Query: 42 YRHHHHHVYEFGR*ITRPVQRLVHARRGTSKDQ 140
+ HHHHH ++ I P G++KD+
Sbjct: 380 HHHHHHHQHQHNEGIIPPFDPFFTNEIGSNKDE 412
>At3g47730.1 68416.m05200 ABC transporter family protein AbcA,
Dictyostelium discoideum, DDU66526
Length = 983
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 496 YLKNHLKTAKTRHDRNTYMVVEPNDESQVLNKSFAEL 606
+ K+HLK ++ V P+D+ +L FAEL
Sbjct: 785 FFKDHLKVKPIEENKAFMTFVIPHDKENLLTSFFAEL 821
>At1g79360.1 68414.m09248 transporter-related low similarity to
SP|O76082 Organic cation/carnitine transporter 2 (Solute
carrier family 22, member 5) (High-affinity
sodium-dependent carnitine cotransporter) {Homo
sapiens}; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 527
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = -1
Query: 575 DSSLGSTTMYVFLSCLVLAV 516
DSSLG M +FLSCLV+A+
Sbjct: 136 DSSLGRKNM-LFLSCLVMAI 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,458,323
Number of Sequences: 28952
Number of extensions: 293383
Number of successful extensions: 975
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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