Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c07
         (311 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   3.0  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    21   4.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    20   6.9  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    19   9.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 9/33 (27%), Positives = 14/33 (42%)
 Frame = -3

Query: 291 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCY 193
           C +   +L   KN  S     +    ++ FKCY
Sbjct: 19  CTVSNVSLHSLKNKRSGASLQVGILDSLVFKCY 51


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 160 FVRRIVHNYPDITFETHSMVTINRS 234
           F+  +++NYPD  F      +IN++
Sbjct: 302 FINVVLNNYPD--FSAAGFFSINKT 324


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 19.8 bits (39), Expect = 6.9
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -2

Query: 217 PCCVFQMLCQDNYGQF 170
           PC     +CQD  G +
Sbjct: 424 PCKHLDAICQDKLGDY 439


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 230 EVTNEESTFLVSFKVVKQILHET 298
           EVT ++S   +     +QI+H T
Sbjct: 220 EVTQKDSPMNMGHLTQQQIIHNT 242


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,967
Number of Sequences: 336
Number of extensions: 1465
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5730534
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)