Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c07
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   1.1  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   2.6  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    25   2.6  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   3.5  
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       25   3.5  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.5  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   3.5  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    24   4.6  
SPCC1739.05 |set5||histone lysine methyltransferase Set5 |Schizo...    24   6.1  
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    23   8.1  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    23   8.1  
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ...    23   8.1  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    23   8.1  

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = -3

Query: 309 FFLEVSCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKCFCSASSSDF 130
           F+  + C +C   LK+   +       IDC++    KCY +++      KC   +S S  
Sbjct: 413 FYQIMRCALCGEFLKNAAGMQC-----IDCHYTCHKKCYPKVVT-----KCISKSSDSAS 462

Query: 129 RVYNK 115
             Y K
Sbjct: 463 SEYEK 467


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 149  LQKHLYVELSIIILT*HLKHTAWLQSIEVTNEE 247
            L+KH  +E   I    + K+  W QSIE++ ++
Sbjct: 1494 LEKHSLLEFRRIAAYIYRKNKRWTQSIELSKQD 1526


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 207 TQHGYNQSKSQTKNLR 254
           T HGYNQ+K   K++R
Sbjct: 82  TVHGYNQAKKLAKSIR 97


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 279 FTTLKDTKNVDSSFVTSIDCNH 214
           FTTLK+ KN+DS  + S++  H
Sbjct: 648 FTTLKNLKNIDS--LESLELGH 667


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 279 FTTLKDTKNVDSSFVTSIDCNH 214
           FTTL +    D  F TSIDCN+
Sbjct: 171 FTTLPEV--TDRIFSTSIDCNY 190


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 12/48 (25%), Positives = 16/48 (33%)
 Frame = -3

Query: 264 DTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKCFCSASSSDFRVY 121
           D      S     + NHA   K Y+R++      K  C      F  Y
Sbjct: 240 DVDKTSGSLSEKSEVNHASLKKTYMRLLNSGKMQKKECDKKGKFFEAY 287


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 270  LKDTKNVDSSFVTSIDCNHAV 208
            LKDT N  S F +S+D  H V
Sbjct: 957  LKDTPNYKSIFKSSLDIYHVV 977


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 145 SAAKTFVRRIVHNYPDITFETHSMVTINRSHKR 243
           SA  +F +  +   PD+T   + ++T  + HK+
Sbjct: 83  SATTSFQQGQIETKPDLTLFINELLTTKKEHKK 115


>SPCC1739.05 |set5||histone lysine methyltransferase Set5
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 319

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 189 RIIMDNSTYKCFCSASSSDFRVYNK 115
           +I++++  +KC+CS  S + R   K
Sbjct: 152 KILLEHFGFKCYCSVCSVEERKIRK 176


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 288 NICFTTLKDTKNVDSSFVTSID 223
           ++ F+TLKD K  ++SF+ S D
Sbjct: 490 DLSFSTLKDMKFEETSFLPSHD 511


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 178 HNYPDITFETHSMVTINR 231
           +NY  + F THS V +NR
Sbjct: 91  YNYISLYFVTHSKVPLNR 108


>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 451

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 161 NVFAALVHQIFACTIS 114
           NV AAL +Q+  CTI+
Sbjct: 405 NVLAALAYQVSECTIT 420


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -3

Query: 222 CNHAVCFKCYVRII 181
           C H  CF C +R +
Sbjct: 230 CGHVYCFSCLLRFV 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,216,763
Number of Sequences: 5004
Number of extensions: 22722
Number of successful extensions: 73
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)