Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c07
(311 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0102 - 4295329-4295366,4295622-4295702,4295946-4296252,429... 30 0.44
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704... 29 1.0
01_06_0281 + 28155039-28155160,28155243-28155333,28155822-281558... 29 1.0
02_04_0073 - 19471254-19472681 28 1.3
08_02_1429 + 27040293-27040523,27041618-27041739,27042290-270423... 28 1.8
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478... 28 1.8
08_02_0662 + 19789406-19789546,19789646-19789779,19790272-197904... 27 2.3
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 3.1
01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603... 27 3.1
07_01_0516 - 3850252-3852870 26 5.4
01_01_0563 + 4142351-4144510,4145610-4147259,4147942-4148185,414... 26 5.4
11_01_0541 + 4275660-4275766,4275856-4275973,4276160-4276386,427... 26 7.2
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090... 26 7.2
04_04_1607 + 34750114-34750193,34750472-34750622,34750730-347507... 26 7.2
03_03_0047 - 14046750-14046788,14046896-14047045,14047143-140472... 26 7.2
01_06_1720 + 39421381-39421444,39422424-39422601,39422812-394229... 26 7.2
07_03_1576 - 27862043-27862129,27862935-27862988,27863042-278632... 25 9.5
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 25 9.5
05_05_0173 + 22956927-22958615 25 9.5
>09_02_0102 -
4295329-4295366,4295622-4295702,4295946-4296252,
4296616-4296696,4296818-4296919,4297358-4297396,
4297453-4297548,4297624-4297683,4297942-4297995,
4298230-4298307,4298577-4298630,4298705-4298788,
4300457-4300485,4300666-4300720
Length = 385
Score = 29.9 bits (64), Expect = 0.44
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 161 LYVELSIIILT*HLKHTAWLQSIEVTNEESTFLVSFKVVKQILHETSKKK 310
LYV LS I L + ++ + N F +KVVK +L E +K+K
Sbjct: 181 LYVMLSTITAIDDLNYPEKTETYFIVNAPYVFSACWKVVKPLLQERTKRK 230
>03_02_0275 +
7042433-7042732,7042864-7043140,7043751-7044231,
7044943-7045491,7045556-7045680,7045824-7045966
Length = 624
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 300 EVSCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCY 193
EV+CN+C+ +V S + +DC H C +C+
Sbjct: 165 EVTCNVCYD------DVPLSDASKMDCGHNYCNECW 194
>01_06_0281 +
28155039-28155160,28155243-28155333,28155822-28155878,
28156174-28156221,28156399-28156449,28156529-28156572,
28156673-28156736,28156927-28157013,28157304-28157395,
28157489-28157539,28158592-28158641,28158717-28158781,
28158876-28159019,28159156-28159197
Length = 335
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 276 TTLKDTKNVDSSFVTSIDCNHAVCFKCYVRII 181
T +K+ K+V ++ TS +H VCF+ + ++
Sbjct: 249 TIMKEYKSVQDAYKTSDKYSHTVCFRAFEHLL 280
>02_04_0073 - 19471254-19472681
Length = 475
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 172 IVHNYPDITFETHSMVTIN 228
I+H Y D+ FE HS + +N
Sbjct: 272 IIHGYQDLLFEKHSWIALN 290
>08_02_1429 +
27040293-27040523,27041618-27041739,27042290-27042392,
27042530-27042620,27042851-27043023,27043379-27043467,
27044212-27044319,27044408-27044498,27044708-27044797,
27045587-27045658,27045756-27045849,27045940-27046087,
27046961-27047222
Length = 557
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 300 EVSCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCY 193
+++C ICF + S ++S DC+H C +C+
Sbjct: 152 KLTCGICF------EGYSSDVMSSADCDHFYCHECW 181
>02_05_0890 -
32546918-32547088,32547224-32547334,32547705-32547884,
32547960-32548064,32548333-32548431,32548524-32548679,
32548772-32548850,32549213-32549278,32549382-32549536,
32549675-32550034,32550150-32550305,32550779-32550856,
32551471-32551812
Length = 685
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 300 EVSCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC 157
++ C IC +KD +F+T+ C H+ C+ C V + S C
Sbjct: 57 DLLCPICMAVIKD------AFLTA--CGHSFCYMCIVTHLSHKSDCPC 96
>08_02_0662 +
19789406-19789546,19789646-19789779,19790272-19790476,
19791233-19791367,19792117-19792746,19793180-19793356,
19795175-19795198
Length = 481
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 300 EVSCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKC 196
E+SC IC+T T+ + + C H C+ C
Sbjct: 380 ELSCVICWTDFSSTRGI-------LPCGHRFCYSC 407
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -3
Query: 294 SCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC-FCSASSSD 133
+C IC+ L D+ + + V +DC H + +C+ ++ +++ Y C CS ++ D
Sbjct: 163 NCPICYEYLFDS--LKGTRV--LDCGHTMHMECFSEMV-EHNKYTCPICSKTALD 212
>01_07_0081 -
40959279-40959375,40959463-40959589,40960138-40960339,
40962414-40963361
Length = 457
Score = 27.1 bits (57), Expect = 3.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 174 NSTYKCFCSASSSDFRVYN 118
N Y CF + + S FR+YN
Sbjct: 105 NQDYGCFAAGTKSGFRIYN 123
>07_01_0516 - 3850252-3852870
Length = 872
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 17 LLTVLFSKSSRQCCLMESRLRMRVKGI 97
L + L+S+S+R C +RL+MR KG+
Sbjct: 710 LASNLYSESARWQCSESTRLKMREKGM 736
>01_01_0563 +
4142351-4144510,4145610-4147259,4147942-4148185,
4148280-4148830
Length = 1534
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 102 EFMPLTLIRNRDSIKQHWRELL 37
EFMP+TL ++ S+ QH +L+
Sbjct: 787 EFMPITLEEDQQSLPQHTSDLV 808
>11_01_0541 +
4275660-4275766,4275856-4275973,4276160-4276386,
4276505-4276729,4276902-4277052,4277139-4277345,
4277442-4277520,4277605-4277723
Length = 410
Score = 25.8 bits (54), Expect = 7.2
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -3
Query: 276 TTLKDTKNVDSSFVTSI---DCNHAVCFKCYVRIIMDNSTYKCFCSASSSDFRVYNKHGY 106
+ +K T N + F+T + D VC+K +I+ + KCF S S +F +K
Sbjct: 275 SVVKSTLNSECKFLTEVTEKDRALTVCWKGKDKIVTIDEVKKCFRSL-SLEFADGDKKAT 333
Query: 105 VEFMP 91
+E P
Sbjct: 334 LEIPP 338
>07_01_1116 +
10308029-10308111,10308575-10308737,10308996-10309062,
10309120-10309375,10309658-10309781,10310039-10310077
Length = 243
Score = 25.8 bits (54), Expect = 7.2
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -3
Query: 225 DCNHAVCFKCY 193
+C+HA+C KCY
Sbjct: 177 NCSHAMCIKCY 187
>04_04_1607 +
34750114-34750193,34750472-34750622,34750730-34750796,
34750905-34751142,34751903-34752113
Length = 248
Score = 25.8 bits (54), Expect = 7.2
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -3
Query: 225 DCNHAVCFKCY 193
+C+HA+C KCY
Sbjct: 166 NCSHAMCMKCY 176
>03_03_0047 -
14046750-14046788,14046896-14047045,14047143-14047277,
14047615-14047673,14047755-14047871,14048035-14048073,
14048245-14048425,14049381-14049464,14049565-14049633,
14050175-14050315,14050435-14050527,14050767-14050895,
14051187-14051501
Length = 516
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Frame = -3
Query: 306 FLEVSCNICFTTLKDT---KNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKCFCSASSS 136
F+E S + C LK+ K + + + D C +RI+ +ST F + S
Sbjct: 264 FVERSTD-CVNLLKELELHKRPEGNDIPLFDLEGLQCLGSILRIVSQSSTTMDFSNISIQ 322
Query: 135 DFRVYNKHGYVEFMPLTL 82
FRV+ K E + + +
Sbjct: 323 WFRVHPKESNKEIISVLI 340
>01_06_1720 +
39421381-39421444,39422424-39422601,39422812-39422980,
39423101-39423170,39423259-39423487,39425130-39425340
Length = 306
Score = 25.8 bits (54), Expect = 7.2
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 225 DCNHAVCFKCY 193
+CNHA+C CY
Sbjct: 224 NCNHAMCINCY 234
>07_03_1576 -
27862043-27862129,27862935-27862988,27863042-27863243,
27865015-27865249,27865338-27865404,27865489-27865639,
27866898-27866957,27867402-27867466
Length = 306
Score = 25.4 bits (53), Expect = 9.5
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -3
Query: 222 CNHAVCFKCY 193
C+HA+C KCY
Sbjct: 181 CSHAMCIKCY 190
>06_03_1496 - 30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -3
Query: 201 KCYVRIIMDNSTYKC--FCSASSSDFRVYNKHGYV 103
+CYV++ M+N+ +C SA+ ++Y+ +V
Sbjct: 1078 RCYVKLTMENTPQECPKLYSATGKQCKLYSAAAHV 1112
>05_05_0173 + 22956927-22958615
Length = 562
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 291 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYK 160
CNICF + VTS C H C+ C + + +ST+K
Sbjct: 238 CNICFEMASEP------VVTS--CGHLFCWPCLYQWLHVHSTHK 273
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,070,004
Number of Sequences: 37544
Number of extensions: 122410
Number of successful extensions: 277
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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