Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c07
(311 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.19
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 29 0.77
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.3
SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.3
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 27 3.1
SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 27 4.1
SB_31116| Best HMM Match : zf-C3HC4 (HMM E-Value=5.6e-10) 26 5.4
SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
>SB_18658| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 31.1 bits (67), Expect = 0.19
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -3
Query: 300 EVSCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKCFCSASSSD 133
+ C ICF L+D VT+ C H C +C V I +N T C + D
Sbjct: 54 DFKCGICFGVLEDP------LVTT--CGHVFCSQCLVHWIAENGTCPLTCEQLAID 101
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 29.1 bits (62), Expect = 0.77
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 222 CNHAVCFKCYVRI-IMDNSTYKCFCSASSSDFRVYN 118
C+H VC+KC VR+ ++ Y C + S + N
Sbjct: 29 CDHPVCYKCCVRMRVLKQENYCTVCRSELSMIFIKN 64
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 222 CNHAVCFKCYVRI-IMDNSTYKCFCSASSS 136
C+H VC+KC VR+ ++ Y C + S
Sbjct: 29 CDHPVCYKCCVRMRVLKQENYCTVCRSELS 58
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -3
Query: 222 CNHAVCFKCYVRIIMDNSTYKCFCSASSSD 133
C + C Y + D+ T CFC A SD
Sbjct: 1093 CKNTFCKNGYQCTVKDDKTTDCFCPALCSD 1122
>SB_48269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1720
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 291 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC 157
C+IC T +K V+S + DC H R +NST+ C
Sbjct: 44 CHICTTRVKKNCTVESDTQCTDDCKHK------PRTYYENSTHDC 82
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 20 LTVLFSKSSRQCCLMESRLRMRVKGINSTYPCLLYTRKSDELALQKHLYVELSIIILT*H 199
L+V KSS +C LME +L+M Y+ +S A Q+ ++ + LT
Sbjct: 825 LSVKLEKSSERCRLMEQQLQMEQSKSTELTTKFQYSSQSSSSAKQEADALKDEVKALTQQ 884
Query: 200 L--KHTAWLQS 226
L +H A L S
Sbjct: 885 LLRQHDASLDS 895
>SB_30220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 222 CNHAVCFKCYVRIIMDNSTYKC 157
C H VC KCY +++ +S+ +C
Sbjct: 447 CGHRVCTKCYTKLL--SSSARC 466
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 2 KSIMRLLTVLFSKSSRQCCLMESRLRMRVKGINSTYPCLLYTRKSD 139
K R L + FSK E+ L+++ KG++ + CL TRK+D
Sbjct: 1829 KRFNRKLPIAFSKICEMLDCSETELKIKGKGVDQIF-CL--TRKTD 1871
>SB_31116| Best HMM Match : zf-C3HC4 (HMM E-Value=5.6e-10)
Length = 169
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/73 (19%), Positives = 31/73 (42%)
Frame = -3
Query: 234 TSIDCNHAVCFKCYVRIIMDNSTYKCFCSASSSDFRVYNKHGYVEFMPLTLIRNRDSIKQ 55
T +C H C C V + D+ C + ++ N + +M T++ + I+
Sbjct: 76 TITECLHTFCKSCIVTYLQDSEDNT--CPSCNTVIHETNPFDLLRYMTGTMLGRGEDIEH 133
Query: 54 HWRELLENNTVNN 16
+R + + T+ +
Sbjct: 134 PFRLIRSDQTLED 146
>SB_59357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1716
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 150 SASSSDFRVYNKHGYVEFMPLTLIRNRDSIKQHWRE 43
S SS + +HG +P L+R+R + W+E
Sbjct: 696 SQSSEEISFLEEHGEAPVVPRPLLRDRSLEVEVWKE 731
>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -3
Query: 210 VCFKCYVRIIMDNSTYKC--FCSA 145
V F C VR+++ ST+ C FC+A
Sbjct: 278 VSFSCCVRVVLVVSTFVCALFCNA 301
>SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 306 FLEVSCNICFTTLKDTKNVDSSFVTSIDC 220
FL+V+C+I +TL T DS + + C
Sbjct: 434 FLQVTCSITQSTLSSTSFADSLSKSLLSC 462
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,944,453
Number of Sequences: 59808
Number of extensions: 177430
Number of successful extensions: 527
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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