Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c07
(311 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07460.2 68416.m00889 expressed protein contains Pfam profile... 30 0.38
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 1.5
At3g56440.1 68416.m06277 WD-40 repeat protein family contains 4 ... 28 1.5
At2g13980.1 68415.m01554 hypothetical protein 28 1.5
At5g51630.2 68418.m06402 disease resistance protein (TIR-NBS-LRR... 27 2.0
At5g51630.1 68418.m06401 disease resistance protein (TIR-NBS-LRR... 27 2.0
At2g02630.1 68415.m00202 DC1 domain-containing protein contains ... 27 2.6
At3g14250.1 68416.m01804 zinc finger protein-related contains we... 27 3.5
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ... 27 3.5
At2g02610.1 68415.m00200 DC1 domain-containing protein contain... 27 3.5
At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger) fa... 27 3.5
At5g07720.1 68418.m00885 galactosyl transferase GMA12/MNN10 fami... 26 4.6
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ... 26 4.6
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 26 4.6
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin... 26 4.6
At1g77530.1 68414.m09028 O-methyltransferase family 2 protein si... 26 4.6
At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 fami... 26 4.6
At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL... 26 6.1
At5g37280.1 68418.m04478 zinc finger (C3HC4-type RING finger) fa... 26 6.1
At5g01750.2 68418.m00094 expressed protein contains Pfam profile... 26 6.1
At2g34890.1 68415.m04283 CTP synthase, putative / UTP--ammonia l... 26 6.1
At1g18690.1 68414.m02332 galactosyl transferase GMA12/MNN10 fami... 26 6.1
At4g14890.1 68417.m02287 ferredoxin family protein similar to SP... 25 8.1
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa... 25 8.1
At1g53340.1 68414.m06046 DC1 domain-containing protein contains ... 25 8.1
>At3g07460.2 68416.m00889 expressed protein contains Pfam profile
PF04398: Protein of unknown function, DUF538
Length = 271
Score = 29.9 bits (64), Expect = 0.38
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 116 LLYTRKSDELALQKHLYVELSIIILT*HLKHTAW 217
L YTRK +++ HL++++ +L +L+H +W
Sbjct: 182 LYYTRKMEKIDRCSHLFLKILSTVLISNLRHDSW 215
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 291 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKC 196
C IC K+ ++DS V ++C++ +CF C
Sbjct: 458 CQIC----KEDFDMDSLEVNCMECDYTICFHC 485
>At3g56440.1 68416.m06277 WD-40 repeat protein family contains 4
WD-40 repeats (PF00400) (2 weak); PS00778 Histidine acid
phosphatases active site signature; similar to Gsa12p
(GI:18307769) {Pichia pastoris}similar to
uncharacterized protein JM5 (GP:3114828) [Homo sapiens]
Length = 391
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 174 NSTYKCFCSASSSDFRVYNKHGYVE 100
N Y CF + +S FR+YN + E
Sbjct: 42 NQDYSCFAAGTSHGFRIYNCEPFKE 66
>At2g13980.1 68415.m01554 hypothetical protein
Length = 171
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 84 LIRNRDSIKQHWRELLENNT 25
+IRN D I QHW L +NT
Sbjct: 41 IIRNHDGIAQHWGSLQLDNT 60
>At5g51630.2 68418.m06402 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1175
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = -3
Query: 201 KCYVRIIMDNSTYKCFCSASSSDFRVYNKHGYVEFMPLTLIRNRDSIKQHWRELLE 34
KCY + F SD R + + EF +T + + +KQ W E LE
Sbjct: 26 KCYKELTQ--IVIPIFYEVDPSDVRKQTRE-FGEFFKVTCVGKTEDVKQQWIEALE 78
>At5g51630.1 68418.m06401 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1229
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = -3
Query: 201 KCYVRIIMDNSTYKCFCSASSSDFRVYNKHGYVEFMPLTLIRNRDSIKQHWRELLE 34
KCY + F SD R + + EF +T + + +KQ W E LE
Sbjct: 90 KCYKELTQ--IVIPIFYEVDPSDVRKQTRE-FGEFFKVTCVGKTEDVKQQWIEALE 142
>At2g02630.1 68415.m00202 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 440
Score = 27.1 bits (57), Expect = 2.6
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = -3
Query: 291 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKC----YVRIIMDNSTYKCFC---SASSSD 133
C+IC +T KD K + I+C+ VCF+C Y+ + Y FC AS SD
Sbjct: 285 CHICRST-KDKK-----VLNCIECDFIVCFECATLPYMIRYKHDEHYLTFCHGDEASDSD 338
Query: 132 F 130
+
Sbjct: 339 W 339
>At3g14250.1 68416.m01804 zinc finger protein-related contains weak
similarity to zinc finger proteins and Pfam:PF01485 IBR
domain
Length = 308
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 303 LEVSCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRII 181
+E S +C + D K F + +C HA C C VR +
Sbjct: 88 MEPSRRLCMICM-DEKPSSDIFRGTTNCTHAYCTDCTVRYV 127
>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 661
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 303 LEVSCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKC 196
LE +C IC K + I+C++ +CFKC
Sbjct: 505 LEATCQIC-----QQKATFLRKLNCIECDYVICFKC 535
>At2g02610.1 68415.m00200 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = -3
Query: 291 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKC----YVRIIMDNSTYKCFCSASSSD 133
C+IC K TKN + I+C+ +CF+C Y+ + Y FC ++
Sbjct: 478 CHIC----KSTKN--KKVLNCIECDFIICFECATLPYMVRYKHDEHYLTFCHGDEAN 528
>At1g06770.1 68414.m00720 zinc finger (C3HC4-type RING finger)
family protein
Length = 421
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -3
Query: 297 VSCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKC 157
+SC+IC L+D + +C H C KC I ++ C
Sbjct: 14 LSCSICDNILRDATTIS-------ECLHTFCRKCIYEKITEDEIETC 53
>At5g07720.1 68418.m00885 galactosyl transferase GMA12/MNN10 family
protein very low similarity to
alpha-1,2-galactosyltransferase, Schizosaccharomyces
pombe [SP|Q09174]
Length = 457
Score = 26.2 bits (55), Expect = 4.6
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +1
Query: 172 IVHNYPDITFETHSMVTIN 228
++H YPD+ F+ S + +N
Sbjct: 250 VIHGYPDLLFDQKSWIALN 268
>At5g03360.1 68418.m00289 DC1 domain-containing protein contains Pfam
profile PF03107: DC1 domain
Length = 1610
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -3
Query: 285 ICFTTLKDTKNVDSSFVTSIDCNHAVCFKC 196
+C + V + SI+C+ A+CF+C
Sbjct: 1546 VCSACKESDCTVTNETFNSIECDFALCFRC 1575
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 291 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKC 196
C+IC K TK D + I+C+ +CF+C
Sbjct: 478 CHIC----KSTK--DKKVLNCIECDFIICFEC 503
>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
protein-related contains Pfam profiles PF03107: DC1
domain, weak hit to PF00628: PHD-finger
Length = 513
Score = 26.2 bits (55), Expect = 4.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 291 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKC 196
CNIC K TK ++CN +CF C
Sbjct: 364 CNIC----KSTKVHKLLNCIEVECNFVICFTC 391
>At1g77530.1 68414.m09028 O-methyltransferase family 2 protein
similar to caffeic acid 3-O-methyltransferase GB:O23760
[Clarkia breweri], [SP|Q00763] [Populus tremuloides]
Length = 381
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +2
Query: 14 RLLTVLFSKSSRQCCLMESRLRMRVKGINSTYP----CLLYTRKSD 139
R+L +L S S +CC++ESR + I Y C + + SD
Sbjct: 91 RMLRLLVSHSILKCCMVESRENGQTGKIERVYAAEPICKYFLKDSD 136
>At1g74380.1 68414.m08617 galactosyl transferase GMA12/MNN10 family
protein very low similarity to
alpha-1,2-galactosyltransferase, Schizosaccharomyces
pombe [SP|Q09174]
Length = 457
Score = 26.2 bits (55), Expect = 4.6
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +1
Query: 172 IVHNYPDITFETHSMVTIN 228
++H YPD+ F+ S + +N
Sbjct: 251 VIHGYPDLLFDQKSWIALN 269
>At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL3)
identical to IAA-amino acid hydrolase homolog ILL3
[Arabidopsis thaliana] gi|3420801|gb|AAC31939
Length = 428
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 163 VRRIVHNYPDITFETHSMVTINRSHKRRIYVFSVF*SSKTNITRNL 300
VRR +H P++ FE H + R + V + +KT I +
Sbjct: 44 VRRQIHENPELLFELHKTSALIRRELDELGVSYSYPVAKTGIVAQI 89
>At5g37280.1 68418.m04478 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHA1b [Arabidopsis thaliana] GI:3790567; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 216
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = -3
Query: 294 SCNICFTTLKD--TKNVDSSFVTSIDCNHAVCFKCYVRII-MDNSTYKC 157
SC+ICF L D ++ +S + C H+ KC + I NS C
Sbjct: 158 SCSICFEKLSDSLSETYHNSIIQMPKCLHSFHQKCIFKWIGRQNSCPLC 206
>At5g01750.2 68418.m00094 expressed protein contains Pfam profile
PF04525: Protein of unknown function (DUF567)
Length = 217
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 65 ESRLRMRVKGINSTYPCLLYTRKSDELALQKH 160
E R RVKG C++Y +SD + Q H
Sbjct: 141 EKRCDFRVKGSWLERSCVVYAGESDAIVAQMH 172
>At2g34890.1 68415.m04283 CTP synthase, putative / UTP--ammonia
ligase, putative similar to SP|P17812 CTP synthase (EC
6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
Pfam profile PF00117: glutamine amidotransferase class-I
Length = 597
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -3
Query: 210 VCFKCYVRIIMDNSTYKCFCSASSSDFRVYNKHGYVEFMP 91
+C + +I + C A+S++F KH + FMP
Sbjct: 397 ICLGMQIAVIEFARSLLCLPDANSTEFEPETKHPCIIFMP 436
>At1g18690.1 68414.m02332 galactosyl transferase GMA12/MNN10 family
protein very low similarity to
alpha-1,2-galactosyltransferase, Schizosaccharomyces
pombe [SP|Q09174]
Length = 632
Score = 25.8 bits (54), Expect = 6.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 172 IVHNYPDITFETHSMVTIN 228
++H YPD+ F S V +N
Sbjct: 428 VIHGYPDLLFNQKSWVALN 446
>At4g14890.1 68417.m02287 ferredoxin family protein similar to
SP|P00252 Ferredoxin I from Nostoc muscorum, SP|P00248
Ferredoxin from Mastigocladus laminosus, SP|P00244
Ferredoxin I from Aphanizomenon flos-aquae; contains
Pfam profile PF00111 2Fe-2S iron-sulfur cluster binding
domain
Length = 154
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = -3
Query: 261 TKNVDSSFVTSIDCNHAVCFKCYVRII 181
+K +DS DCN VC C +++
Sbjct: 76 SKALDSGLDVPYDCNLGVCMTCPAKLV 102
>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 683
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/57 (22%), Positives = 21/57 (36%)
Frame = -3
Query: 306 FLEVSCNICFTTLKDTKNVDSSFVTSIDCNHAVCFKCYVRIIMDNSTYKCFCSASSS 136
F + S N C L+ K+ + + + +C+H F C N C S
Sbjct: 122 FKQSSSNKCGICLQSVKSGQGTAIFTAECSHTFHFPCVTSRAAANHNRLASCPVCGS 178
>At1g53340.1 68414.m06046 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 667
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 291 CNICFTTLKDTKNVDSSFVTSIDCNHAVCFKC 196
C+IC + KD ++ + I+C+ +CFKC
Sbjct: 502 CHICQES-KD-ESFSCKKLNCIECDFVICFKC 531
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,053,527
Number of Sequences: 28952
Number of extensions: 110202
Number of successful extensions: 357
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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