Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c04
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 28 0.89
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 28 0.89
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 27 2.1
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 27 2.1
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 27 2.7
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 27 2.7
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch... 26 4.8
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 26 4.8
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 25 8.3
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 8.3
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 28.3 bits (60), Expect = 0.89
Identities = 15/80 (18%), Positives = 39/80 (48%)
Frame = +3
Query: 15 MLYKLLNVLWLVVAVSNAIPGTPVIDWAERNYALVKINYEATAYENLIKLKEQVDVHVSW 194
++ KL+++ + +SN + P+ DW ++ A++ Y+ +++ L ++
Sbjct: 1138 VVQKLISIPAALQRISNPVTRFPLPDWLQKRVAVLNSKYQQKKIDSIFSLAPTNPSTIN- 1196
Query: 195 NVWNGDIGDIAYVFFDEQQV 254
N DI D+ V ++++
Sbjct: 1197 NTKVTDIEDLGSVTHKDKRI 1216
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 28.3 bits (60), Expect = 0.89
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 379 SQTPTAVIWRRSNTHGW-KTTNPAEERIKLSL 471
S P++++ R S+TH W K TN + E + L L
Sbjct: 619 SSLPSSLLNRGSSTHSWEKLTNASTEEVMLPL 650
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = -1
Query: 302 HNNINGSPFTV--GVAFPYLLLVKEHVRYVANVAVPYVPTDVNVD 174
H ++ G +T G++ Y+L V E ++ + +VPT V+
Sbjct: 716 HQDVGGKDYTTKYGLSMSYILPVLERLKLPPSARAQHVPTTAGVE 760
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -3
Query: 129 NLFL-RAHNCV--RPNRSPACRESRWKRRPPTTKR 34
NLF + H CV PN P ES+ R+P TKR
Sbjct: 1231 NLFRQKLHECVPIAPNPPPIIGESKSTRKPRPTKR 1265
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 45 LVVAVSNAIPGTPVIDWAERNYALVKINYEATAYENLIKL 164
L+ +S+ GTPV+D+ ++ ++I++ T +NL+K+
Sbjct: 15 LIDQLSSVTQGTPVLDFIDK----LRIHFYTTIRQNLLKI 50
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = -2
Query: 397 PPSVSAILTNTGSLM---EQPSSLQSLTRMLNCPLTITLMVALLLSASPFHTCCSSKNTY 227
PPS + T+ L ++ S S + P M++ +AS H SS ++Y
Sbjct: 71 PPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSSSSY 130
Query: 226 AMSPMSP 206
A+SP SP
Sbjct: 131 AVSPTSP 137
>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 4.8
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -2
Query: 373 TNTGSLMEQPSSLQSLTRMLNCPLTITLMVALLLSASPFHTCCSSKNTYAMSPMSPFH 200
T +G L+ +P L SL P T + LLL+AS T C Y +P S FH
Sbjct: 122 TYSGVLLHRPWKLFSLK-----PFTAAFV--LLLAASYLATACFRMLGYLGTPRSRFH 172
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 4.8
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Frame = -3
Query: 558 NRTTSAINLARELCLRESCARTHPTRQ-----STQRQFYPLFCRVCCFPAMCIRAAPDD 397
N+ + INL LC+ SC HPT Q S Q + C C + PD+
Sbjct: 232 NQAINTINLL--LCIAVSCLSVHPTIQEYNPRSGLAQSSMVMCYTCYLILSALANRPDE 288
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/59 (22%), Positives = 26/59 (44%)
Frame = -2
Query: 394 PSVSAILTNTGSLMEQPSSLQSLTRMLNCPLTITLMVALLLSASPFHTCCSSKNTYAMS 218
P + ++ +G + S +L + CP + ++ LL H CCS+ + +S
Sbjct: 132 PGLLIVMPISGRIAYWTSIGNALAQSYICPQGMESLIKLLPKEKCEHLCCSNPMKFIIS 190
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 120 KINYEATAYENLIKLKEQVDVHVSWNVW 203
K N A AYE++ K+ E ++ + S +W
Sbjct: 945 KSNEAAIAYESVGKISEAIEAYKSAGMW 972
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,136
Number of Sequences: 5004
Number of extensions: 53047
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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