Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c04
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0134 + 7082462-7082627,7084199-7084325,7084404-7084611,708...    30   1.6  
11_06_0145 - 20615044-20617167,20617444-20618076                       29   2.8  
01_06_1774 + 39803747-39803825,39805338-39805555,39805856-398064...    29   2.8  
11_01_0089 + 670597-672210                                             29   3.7  
09_04_0078 + 14379720-14379786,14379903-14379974,14381093-143814...    27   8.5  
04_04_1550 - 34332948-34335986                                         27   8.5  
04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377...    27   8.5  

>02_02_0134 +
           7082462-7082627,7084199-7084325,7084404-7084611,
           7084864-7084990,7085071-7085255,7085332-7085454,
           7085777-7085836,7085980-7086117
          Length = 377

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 161 LY*IFVSGGLVIYFYERIIAFGPIDHRR 78
           LY IF   GL  YFYE +  + P +HR+
Sbjct: 213 LYGIFPYSGLKFYFYETMKTYVPEEHRK 240


>11_06_0145 - 20615044-20617167,20617444-20618076
          Length = 918

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -1

Query: 455 LSSAGFVVFQPCVFERRQMTAVGVCDFDQHGIAYGTAVLIAKFDTHV 315
           L    F++   CV++R  +  VG+   D  G  Y   V+     +HV
Sbjct: 238 LKERNFLLLLDCVWQRLDLEEVGIPSLDLVGSCYNRRVVFTACSSHV 284


>01_06_1774 +
           39803747-39803825,39805338-39805555,39805856-39806436,
           39807239-39808136
          Length = 591

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 126 NYEATAYENLIKLKEQVDVHVSWNVWNGDIGDIAYVFF 239
           NY +TA  N+++     D H SW   N ++G + Y F+
Sbjct: 500 NYLSTALANIMRKVTTRDGHSSWLTDNINLGKLDYYFY 537


>11_01_0089 + 670597-672210
          Length = 537

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 141 RWPRNLFLRAHNCVRP-NRSPACRESRWKRRPPTT 40
           RWPR LFL      RP  R+  C      R PPTT
Sbjct: 51  RWPRGLFLSPLTKPRPTRRAHQCVPHPRPRLPPTT 85


>09_04_0078 +
           14379720-14379786,14379903-14379974,14381093-14381497,
           14382835-14382911,14383016-14383135,14383227-14383997,
           14384933-14385146,14385269-14385735
          Length = 730

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 222 IAYVFFDEQQVWKGDADSKRATINVIVSGQFNMRVKLCNEDGCSISDPVLVKIADTDG 395
           +A V   E+ +WK   D     +N+++S   +  V +CN DG    D  L  I+ T G
Sbjct: 155 VAAVVGVERLMWKSRKDVVH-WLNMLISDVASDEVAICNNDG---KDAKLANISTTKG 208


>04_04_1550 - 34332948-34335986
          Length = 1012

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +3

Query: 24  KLLNVLWLVV-AVSNAIPGTPVIDWAERNYALVKINYEATAYENLIKLKEQVDVHVSWNV 200
           KLLN L+L    ++ ++P    +  A R  +L +     +  ++L  L E   + +S+N+
Sbjct: 195 KLLNDLFLDGNGLTGSLPKDLYMMPALRKLSLQENKLSGSLDDDLGNLTEITQIDLSYNM 254

Query: 201 WNGDIGDI 224
           +NG+I D+
Sbjct: 255 FNGNIPDV 262


>04_03_0306 +
           14136338-14136686,14137408-14137442,14137701-14137778,
           14138046-14138124,14138731-14138823,14139472-14139556,
           14140270-14140345,14140669-14140794,14141039-14141137,
           14141238-14141339,14141561-14141671,14141809-14141904,
           14142488-14142539,14142624-14142735,14142879-14142943,
           14144124-14144521,14145236-14145330,14145989-14146015,
           14146081-14146156,14146368-14146421,14146741-14146863,
           14146955-14147023
          Length = 799

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
 Frame = +3

Query: 72  PGTPVIDWAERNYALVK---INYEATAYENLIKLKEQVDVHVSWNVWNGDIGDIAYVFFD 242
           P T   DW      ++     + EA   E    +KEQ    + +N+W  D G +  + FD
Sbjct: 278 PRTTFADWNTSLQTIITWSPYSTEAELLEQFSSIKEQGTRIIIYNLWEDDEGHLE-LDFD 336

Query: 243 EQ----QVWKGDADSKRATINVIVSGQF 314
           E     Q+  G+ D K    N++++ QF
Sbjct: 337 EDIHDIQLRGGNRDEK----NILMAKQF 360


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,462,957
Number of Sequences: 37544
Number of extensions: 373341
Number of successful extensions: 1107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)