Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c04
(593 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_58111| Best HMM Match : fn3 (HMM E-Value=0) 32 0.30
SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 29 2.1
SB_20502| Best HMM Match : Ank (HMM E-Value=4.2) 29 2.8
SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) 29 3.7
SB_40739| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-28) 29 3.7
SB_7401| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_33182| Best HMM Match : rve (HMM E-Value=0.00043) 28 4.9
SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_24440| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_21903| Best HMM Match : DUF21 (HMM E-Value=0) 27 8.6
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -2
Query: 397 PPSVSAILTN--TGSLMEQPSSLQSLTRMLNCPLTITLMVALLLSASPFHTCCSS 239
P V +ILT TGS+ P+ +Q+ T +L +L V ++SA+P T +S
Sbjct: 796 PTQVKSILTTVLTGSMTLMPTIIQNSTEVLQSSAVASLNVTTIVSATPSFTLSAS 850
>SB_58111| Best HMM Match : fn3 (HMM E-Value=0)
Length = 934
Score = 32.3 bits (70), Expect = 0.30
Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Frame = -1
Query: 374 DQHGIAYGTAVLIAKFDTHVKLPAHNNINGSPFTVGVAFPYLLLVKEHVR-YVANVAVPY 198
+++G+ ++IA + P + + S F+ + + LLV + Y+A + +
Sbjct: 579 EKYGVHKFVQIIIAPGVALIVPPQESQESSSAFSNAILDSWTLLVLMLIFIYIAGITIWA 638
Query: 197 VPTDVNVDLFFELY*IFVSGGLVIYFYERIIAFGPIDHRRAGNRVGNGDHQPQNV 33
V +VN + E F+ GG++ + ++F + + G + G GD P++V
Sbjct: 639 VDFEVNPE---EFPGSFLRGGILEGSWFAFVSFTTVGYVNEGGQDGYGDRAPKSV 690
>SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 715
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 253 TCCSSKNTYAMSPMSPFHTFQLT 185
T C SK TY ++ +SPFH + ++
Sbjct: 391 TLCVSKTTYNLTDLSPFHMYNIS 413
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 364 PCWSKSQTPTAVIWRRSNTHGWKTTNP 444
P +++ T TA W +NTHGW + P
Sbjct: 315 PWYARFCTATADDWTATNTHGWSSCAP 341
>SB_20502| Best HMM Match : Ank (HMM E-Value=4.2)
Length = 396
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 300 VSGQFNMRVKLCNEDGCSISDPVLVKIADTDGGHLAPLEYTWLENNKPGRRED 458
VSG+ V++ G ISD V I D DG H LEY E + G+ D
Sbjct: 139 VSGRHLETVRMLRGAGAKISD-VEYDIEDPDGDHWEWLEYLDSEMERAGKYGD 190
>SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +3
Query: 300 VSGQFNMRVKLCNEDGCSISDPVLVKIADTDGGHLAPLEYTWLENNKPGRRED 458
VSG+ V++ G ISD V I D DG H LEY E + G+ D
Sbjct: 806 VSGRHLETVRMLRGAGAKISD-VEYDIEDPDGDHWEWLEYLDSEMERAGKYGD 857
>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 2322
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 530 QGNFVYGKAAPVHTPLDKVRSDNFILSSAGFV 435
+GN++YG LD + D F LSS+ FV
Sbjct: 2120 EGNYIYGVYDQADKTLDSILKDYFHLSSSVFV 2151
>SB_40739| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-28)
Length = 327
Score = 28.7 bits (61), Expect = 3.7
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Frame = -1
Query: 431 FQPCVFERRQMTAVGVCDFDQHGIAYGTAVLIAKFD--THVKLPAHNNINGSPFTVGVAF 258
F PCVF T + + +A F T V L N NG+ +TVG+
Sbjct: 192 FLPCVFMLYAYTRILIVARRHRKEISARLKRMASFSESTDVALAQRGNKNGAMYTVGIIV 251
Query: 257 PYLLLVKEHVRY 222
LL V+Y
Sbjct: 252 GIFLLCNSFVQY 263
>SB_7401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 403
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 3 RQIKMLYKLLNVLWLVVAVSNAIPGTPVIDWAERNYALVKINYEAT 140
R++KML + + LW + NA+ V D+ ER + + Y +T
Sbjct: 248 RELKMLVRQHSSLWEAINYDNAMKSETVKDFEERVHVRLNPQYYST 293
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 198 VWNGDIGDIAYVFFDEQQVWKGDADSKRATINVIVSGQFNMRVKLC-NEDGCSISDPVLV 374
+W DI + VFF+ ++V + D N + +F+ + L N D C I P+L+
Sbjct: 1357 MWRDDI-TVTVVFFNSEEVRYANGDRAEILSNQM---RFSSSLPLYRNSDNCIIDSPLLL 1412
Query: 375 KIADTDG 395
+ T+G
Sbjct: 1413 QHPMTNG 1419
>SB_33182| Best HMM Match : rve (HMM E-Value=0.00043)
Length = 801
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -3
Query: 576 HRRWV*NRTTSAINLARELCLRESCAR 496
HRR NR LARE+C R+ C R
Sbjct: 232 HRRRSHNRPRRRYRLAREVCARKVCVR 258
>SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1127
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +3
Query: 180 VHVSWNVWNGDIGDIAYVFFDEQQVWKGDADSKRATINVIVSG-------QFNMRVKLCN 338
+H+SWN GD+ YV + + + + + + NVI+SG Q +R +L N
Sbjct: 241 IHLSWNPVPVQQGDLTYVI--QYKTTEEEHQVRTSQDNVILSGLRQFTTYQVRVRAQLNN 298
Query: 339 EDGCSISDPVLVKIADTD 392
++ S V+ AD D
Sbjct: 299 DEVIVTSSWKSVRTADQD 316
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 39 LWLVVAVSNAIPGTPVIDWAERNYALVKINYEATAYE-NLIK 161
+WL + + NA G+ V+DW + EA Y NL+K
Sbjct: 797 MWLKITIPNAFIGSDVVDWLYTHVEGFMDRREARKYACNLLK 838
>SB_25273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 82 GVPGIALETATTNHKTFNNLYNIL 11
GVP IA +TTN NN+Y +L
Sbjct: 458 GVPTIAYGNSTTNSTKKNNIYQVL 481
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 243 EQQVWKGDADSKRATINVIVSGQFNMRVKLC 335
EQQV++G++D IN +V +++C
Sbjct: 957 EQQVFEGNSDQDTVVINDLVQPLLTQHIRIC 987
>SB_24440| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 437
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = -1
Query: 278 FTVGVAFPYLLLVKEHVRYVANVAVPYVPTDVNVDLFFELY*IFVSGGLVIYF 120
+T V Y+ L HV ++ + Y P++V V LF ++ + G ++YF
Sbjct: 253 YTTCVTPLYIFLSIYHVEFLFKKTLDYNPSEVAVYLFLLIFHVNCVLGPIMYF 305
>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1257
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -1
Query: 515 YGKAAPVHT---PL-DKVRSDNFILSSAGFVVFQPCVFERRQMTAVGVC 381
YG + P H PL KVR++ LS+ G+V PC++ R + G C
Sbjct: 1190 YGLSLPSHPAQCPLCAKVRTNPTALSTCGYVFCYPCIY--RYLGQHGCC 1236
>SB_21903| Best HMM Match : DUF21 (HMM E-Value=0)
Length = 1040
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 295 TLMVALLLSASPFHTCCSSKNTYA 224
T +V LL +A FH CC+S YA
Sbjct: 279 TQLVDLLANALDFHLCCASVCAYA 302
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,918,919
Number of Sequences: 59808
Number of extensions: 427530
Number of successful extensions: 1238
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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