Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c04
         (593 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25165.1 68416.m03142 rapid alkalinization factor (RALF) fami...    30   1.0  
At2g39130.1 68415.m04807 amino acid transporter family protein b...    29   1.8  
At4g21770.1 68417.m03150 pseudouridine synthase family protein c...    29   3.1  
At2g34300.1 68415.m04196 dehydration-responsive protein-related ...    28   4.1  
At4g28080.1 68417.m04027 expressed protein                             28   5.4  
At5g56325.1 68418.m07030 hypothetical protein                          27   7.1  
At3g46150.1 68416.m04994 hypothetical protein                          27   7.1  
At2g14500.1 68415.m01623 F-box family protein contains F-box dom...    27   7.1  
At1g14230.1 68414.m01684 nucleoside phosphatase family protein /...    27   7.1  
At5g44510.1 68418.m05453 disease resistance protein (TIR-NBS-LRR...    27   9.4  
At5g08770.1 68418.m01040 expressed protein                             27   9.4  
At3g57970.1 68416.m06461 emsy N terminus domain-containing prote...    27   9.4  

>At3g25165.1 68416.m03142 rapid alkalinization factor (RALF) family
           protein
          Length = 74

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 123 FLRAHNCVRPNRSPACRESRWKRRPPTTKRLTICTT 16
           +L    C+RPN  P C    +K R P       CTT
Sbjct: 29  YLLLDPCLRPNAPPGCHRQPYKPRTPVNVYSRGCTT 64


>At2g39130.1 68415.m04807 amino acid transporter family protein
           belongs to INTERPRO:IPR002422 amino acid/polyamine
           transporter, family II
          Length = 550

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 592 SFIPSPPQMGMKPYNKCDKFGKGTLSTGKLRPYTPHS 482
           S +PSP  +G    N   +FG   LS+G +R +TP S
Sbjct: 67  SSVPSPG-IGFLGNNSMTRFGSSFLSSGLIRRHTPES 102


>At4g21770.1 68417.m03150 pseudouridine synthase family protein
           contains Pfam profile PF00849: RNA pseudouridylate
           synthase
          Length = 472

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 123 FLRAHNCVRPNRSPACRESRWKRR 52
           +LR H  V P RSP C E  WK R
Sbjct: 189 YLRVH--VHPKRSPRCYEIDWKSR 210


>At2g34300.1 68415.m04196 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/32 (31%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -3

Query: 420 CIRAAPDDRRRCLRF*PTRDRLW-NSRPHCKV 328
           C+ + PD  +R +++  +R+++W N+ PH K+
Sbjct: 284 CLVSLPDGYKRSIKWPKSREKIWYNNVPHTKL 315


>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/70 (24%), Positives = 36/70 (51%)
 Frame = -2

Query: 418  YSSGAR*PPSVSAILTNTGSLMEQPSSLQSLTRMLNCPLTITLMVALLLSASPFHTCCSS 239
            +SSG R  PS++ + TN  ++ +QPS  +  +     P T +  +++ ++ S   T   +
Sbjct: 1098 FSSGRRTRPSLAKLNTNFMNVTQQPSRSRGKSTNFTSPRTSSNELSISVAGS---TSSPA 1154

Query: 238  KNTYAMSPMS 209
               +  SP++
Sbjct: 1155 SKMFVKSPLN 1164


>At5g56325.1 68418.m07030 hypothetical protein
          Length = 264

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 364 PCWSKSQTPTAVIWRRSNTHGWKTTNPAEERIKLSLRTLSSGVC 495
           PCWS+  +    +     T  W+    AEE  +++   L S +C
Sbjct: 182 PCWSEPSSIPECLTHNLETFKWEHYYGAEEEKEVAAFILRSSIC 225


>At3g46150.1 68416.m04994 hypothetical protein 
          Length = 142

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 99  ERNYALVKINYEATAYENLIKLKEQVDVHVSWNV 200
           +R+ AL+     A  YE  I   E+ D H+SW++
Sbjct: 100 KRHLALLLPLSFAQVYEGFISFYEEEDKHISWDI 133


>At2g14500.1 68415.m01623 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 347

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 376 KSQTPTAVIWRRSNTHGWKTTNPAEERIKLSLRTLSSGV 492
           K+++P  +++     HG    NP E+RI  S+R  S  +
Sbjct: 45  KTKSPWLILFPDEGVHGCVLYNPDEDRIYKSVRDFSGTI 83


>At1g14230.1 68414.m01684 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to SP|P49961
           Ectonucleoside triphosphate diphosphohydrolase 1 (EC
           3.6.1.5) (Ecto-apyrase) {Homo sapiens}; contains Pfam
           profile PF01150: GDA1/CD39 (nucleoside phosphatase)
           family
          Length = 503

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 75  GTPVIDWAERNYALVKINYEATAY 146
           G PV D+ E NYA +K++   +AY
Sbjct: 104 GKPVFDFGEENYASLKLSPGLSAY 127


>At5g44510.1 68418.m05453 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1187

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -2

Query: 376 LTNTGSLMEQPSSLQSLTRMLNCPLTITLMVALLLS 269
           L N  SLME PSS+ +LTR+ +  L+  L +  L S
Sbjct: 807 LLNCSSLMECPSSMLNLTRLEDLNLSGCLSLVKLPS 842


>At5g08770.1 68418.m01040 expressed protein
          Length = 297

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 498 GRSFPVDKVPLPNLSHLLYGF 560
           GR   +D  P P+LSH+++ F
Sbjct: 84  GRDLGMDMYPTPSLSHIIFSF 104


>At3g57970.1 68416.m06461 emsy N terminus domain-containing protein
           / ENT domain-containing protein contains Pfam profile
           PF03735: ENT domain
          Length = 319

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +3

Query: 300 VSGQ-FNMRVKLCNEDGCSISDPVLVKIADTDGGHLAPLEYTWLENNKPGRRED 458
           V GQ   +R+KL  +D   I D VL      DG  LAP +    E  KP    D
Sbjct: 134 VDGQPLIIRIKLNKDDNAKIQDRVLAPAKIKDGKVLAPAKIQ-DEEAKPSSTSD 186


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,617,535
Number of Sequences: 28952
Number of extensions: 287686
Number of successful extensions: 843
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)