Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c03
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)                89   3e-18
SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24)                   88   6e-18
SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)                86   2e-17
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)                      79   3e-15
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)                      74   8e-14
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)                      73   1e-13
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   9e-11
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   8e-10
SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)                52   3e-07
SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)                  48   8e-06
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   2e-04
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_47222| Best HMM Match : UQ_con (HMM E-Value=5)                      38   0.007
SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)                     32   0.33 
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)                 29   2.3  
SB_31468| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_44322| Best HMM Match : UQ_con (HMM E-Value=1.6e-37)
          Length = 190

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 41/78 (52%), Positives = 53/78 (67%), Gaps = 4/78 (5%)
 Frame = +2

Query: 395 YPMSAPKVRFITKIYHPNIDRLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNP 562
           YP   PKVRF+T IYHPNID  GRICLD L    K  W PAL I +VL +I  L++ PNP
Sbjct: 25  YPFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWKPALNISSVLSTILILMAEPNP 84

Query: 563 DDPLANDVAELWKVNESE 616
           DDPL  +++  +K N+++
Sbjct: 85  DDPLMAEISNEFKYNKAQ 102


>SB_57663| Best HMM Match : UQ_con (HMM E-Value=0.24)
          Length = 48

 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 41/44 (93%), Positives = 42/44 (95%)
 Frame = +2

Query: 491 KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNESEAI 622
           KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE WKVNE +AI
Sbjct: 2   KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKVNEVQAI 45


>SB_28696| Best HMM Match : UQ_con (HMM E-Value=5.3e-30)
          Length = 204

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 40/77 (51%), Positives = 52/77 (67%), Gaps = 4/77 (5%)
 Frame = +2

Query: 398 PMSAPKVRFITKIYHPNIDRLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPD 565
           P   PKVRF+T IYHPNID  GRICLD L    K  W PAL I +VL +I  L++ PNPD
Sbjct: 40  PFEPPKVRFVTPIYHPNIDSSGRICLDTLKMPPKGMWKPALNISSVLSTILILMAEPNPD 99

Query: 566 DPLANDVAELWKVNESE 616
           DPL  +++  +K N+++
Sbjct: 100 DPLMAEISNEFKYNKAQ 116


>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 1282

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
 Frame = +2

Query: 212  MAALPRRIIKETQRLMQEPVPGISA-VPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXX 388
            +++  R +  E ++L +EPV G +  VP E+N   + V + GP  +              
Sbjct: 1122 LSSAVRALQLELKKLTEEPVEGFTVEVPDESNTFEWDVAIFGPPGTLYAGGYFKAHMSFP 1181

Query: 389  XDYPMSAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLL 529
             DYP S P  RF+TK++HPNI   G +C+ IL              ++W+P   +RT+LL
Sbjct: 1182 HDYPYSPPTFRFLTKMWHPNIYESGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL 1241

Query: 530  SIQALLSAPNPDDPLANDVAELWK 601
            S+ +LL+ PN   P   D + +++
Sbjct: 1242 SVISLLNEPNTFSPANVDASVMFR 1265


>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 226

 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 47/130 (36%), Positives = 60/130 (46%)
 Frame = +2

Query: 227 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 406
           +RI +E   +  +P P  SA P   +   ++  + GP  S               DYP  
Sbjct: 98  KRIQRELTEITLDPPPNCSAGPKGDDLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFK 157

Query: 407 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 586
            PK               G +CLDILKD WSPAL I  VLLSI +LL+  NP DPL   +
Sbjct: 158 PPK---------------GMVCLDILKDSWSPALTISKVLLSICSLLTDCNPADPLVGSI 202

Query: 587 AELWKVNESE 616
           A L+  N SE
Sbjct: 203 AALYVQNRSE 212


>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
          Length = 145

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
 Frame = +2

Query: 296 ETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRLGRICL 475
           E+N  Y+  ++  PE                 +YP   PK+ F TKIYHPNID  G++CL
Sbjct: 20  ESNILYWQGLIV-PEMPPYNKGAFRIEICFPAEYPFKPPKITFKTKIYHPNIDEKGQVCL 78

Query: 476 DILK-DKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 592
            I+  + W PA +   V+ ++ AL+  P P+ PL  D+AE
Sbjct: 79  PIISPENWKPATKTEQVIQALLALVHDPEPEHPLRADLAE 118


>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 26/58 (44%), Positives = 39/58 (67%)
 Frame = +2

Query: 422 FITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEL 595
           F+TKI+HPN+ + G IC++ LK  W P L I+ VLL+++ LL  PNP+  L  +  +L
Sbjct: 147 FLTKIFHPNVAKNGEICVNTLKKDWKPDLGIKQVLLTVKCLLIVPNPESALNEEAGKL 204


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 60.9 bits (141), Expect = 8e-10
 Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 14/130 (10%)
 Frame = +2

Query: 242 ETQRLMQEPVPGISAVPSETNARY-FHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKV 418
           ET+ L ++PV G SA   +    Y + ++V GP  +               +YP   P +
Sbjct: 341 ETE-LQKKPVEGFSAGLFDDEDLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTL 399

Query: 419 RFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPN 559
            FI+ I+HPN+ + G +C+ IL              ++W P   + T++LS+ ++L+ PN
Sbjct: 400 TFISDIWHPNVHKNGEVCISILHEPGEDKYGYEKADERWRPIHTVETIMLSVISMLAEPN 459

Query: 560 PDDPLANDVA 589
            + P   D A
Sbjct: 460 DESPANVDAA 469


>SB_26076| Best HMM Match : UQ_con (HMM E-Value=3.6e-15)
          Length = 243

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = +2

Query: 392 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 571
           DYP  AP +   TKIYHPN+D    +C+ +L D W  +  +  ++  +  L   PN +DP
Sbjct: 63  DYPNVAPSINCKTKIYHPNMDGYDGVCMSLL-DDWQASNDLEDLVQGLLFLFYNPNLEDP 121

Query: 572 LAN 580
           L++
Sbjct: 122 LSS 124


>SB_26077| Best HMM Match : UQ_con (HMM E-Value=6e-18)
          Length = 215

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +2

Query: 392 DYPMSAPKVRFITKIYHPNID-RLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 568
           DYP + P  R +  IYHPN+D   G +CL +L D W+ +  +  ++  +  L   PN +D
Sbjct: 63  DYPNTPPVPRCVNNIYHPNMDLDDGSVCLSLL-DDWNESNDLEDLVQGLLFLFYNPNLED 121

Query: 569 PLA 577
           PL+
Sbjct: 122 PLS 124


>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
 Frame = +2

Query: 287 VPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITK-----IYHPNI 451
           VP + +    H ++TGP D+               DYP+  P+V+ +T       ++PN+
Sbjct: 4   VPDKDDIPKIHALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGSGQVRFNPNL 63

Query: 452 DRLGRICLDILKD 490
            R G++CL I+ D
Sbjct: 64  YRNGKVCLSIIGD 76


>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
 Frame = +2

Query: 227 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 406
           +R+++E + L +       A P E N   +H  V GP D+               +YPM 
Sbjct: 13  KRLMREAKEL-RNATELYHAQPLEDNLFEWHFTVRGPPDTEFAGGRYHGRIILPPEYPMK 71

Query: 407 APKVRFITKIYHPNIDRLGRICLDIL---KDKWSPALQIRTVLLSI 535
            P +  +T      I +  +ICL +     + W P+  IRTVL++I
Sbjct: 72  PPSIMLLTPNGRFEIGK--KICLSMSAHHPETWQPSWSIRTVLMAI 115


>SB_47222| Best HMM Match : UQ_con (HMM E-Value=5)
          Length = 46

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = +2

Query: 524 LLSIQALLSAPNPDDPLANDVAELWKVNE 610
           LLSI +LL  PNPDDPL  D+A ++K ++
Sbjct: 2   LLSICSLLCDPNPDDPLVPDIARIYKTDK 30


>SB_12505| Best HMM Match : FHA (HMM E-Value=0.097)
          Length = 629

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 446 NIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAELWKVNE 610
           NID   +   D +++KWS +L  R   L  Q   S  NPD  + +   E W +++
Sbjct: 547 NIDTPQKGLQDSMREKWSNSLMKRREYLDDQIHSSMNNPDKSVVDKERESWLIDQ 601


>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
          Length = 200

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/63 (25%), Positives = 24/63 (38%)
 Frame = +2

Query: 227 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 406
           +RI +E   +  +P P  SA P   +   ++  + GP  S               DYP  
Sbjct: 138 KRIQRELTEITLDPPPNCSAGPKGDDLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYPFK 197

Query: 407 APK 415
            PK
Sbjct: 198 PPK 200


>SB_31468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 282 AQYLARQTP-VTSTLS*RAQRTRLSKEDCSN*NYFYRRITPCRH 410
           AQ  AR +P +T T   +  RTR SK + +N  +FY ++    H
Sbjct: 17  AQKKARSSPQLTQTGEAKRNRTRKSKHNRANDTWFYTQLVKLSH 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,935,639
Number of Sequences: 59808
Number of extensions: 347529
Number of successful extensions: 937
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)