Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19c03
(624 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 215 2e-56
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 111 3e-25
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 111 3e-25
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 108 4e-24
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 108 4e-24
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 85 3e-17
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 85 5e-17
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 79 2e-15
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 76 2e-14
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 75 5e-14
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 71 9e-13
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 63 1e-10
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 63 1e-10
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 63 1e-10
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 61 5e-10
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 56 2e-08
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 54 6e-08
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 53 1e-07
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 49 2e-06
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 46 3e-05
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 44 1e-04
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 41 6e-04
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 40 0.001
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 31 0.67
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 29 2.7
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 215 bits (526), Expect = 2e-56
Identities = 100/134 (74%), Positives = 112/134 (83%)
Frame = +2
Query: 221 LPRRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYP 400
LPRRIIKETQRL+ +PVPGISA P E+NARYFHV++ GP+DS +YP
Sbjct: 5 LPRRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYP 64
Query: 401 MSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 580
M+APKVRF+TKIYHPNID+LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP+DPLA
Sbjct: 65 MAAPKVRFMTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPEDPLAT 124
Query: 581 DVAELWKVNESEAI 622
DVAE WK NE+EAI
Sbjct: 125 DVAEQWKTNEAEAI 138
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 111 bits (268), Expect = 3e-25
Identities = 56/127 (44%), Positives = 74/127 (58%)
Frame = +2
Query: 227 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 406
+RI KE Q L ++P SA P + ++ + GP +S DYP
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 407 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 586
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 587 AELWKVN 607
A ++K +
Sbjct: 124 ARIYKTD 130
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 111 bits (268), Expect = 3e-25
Identities = 56/127 (44%), Positives = 74/127 (58%)
Frame = +2
Query: 227 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 406
+RI KE Q L ++P SA P + ++ + GP +S DYP
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 407 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 586
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 587 AELWKVN 607
A ++K +
Sbjct: 124 ARIYKTD 130
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 108 bits (259), Expect = 4e-24
Identities = 46/130 (35%), Positives = 78/130 (60%)
Frame = +2
Query: 227 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 406
RR++++ ++L ++P G+S P+E N + I+ GP+++ +YP
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 407 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 586
P V+FI+K++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 587 AELWKVNESE 616
A+L++ N E
Sbjct: 127 AQLYQENRRE 136
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 108 bits (259), Expect = 4e-24
Identities = 46/130 (35%), Positives = 78/130 (60%)
Frame = +2
Query: 227 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 406
RR++++ ++L ++P G+S P+E N + I+ GP+++ +YP
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 407 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 586
P V+FI+K++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ P +
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 587 AELWKVNESE 616
A+L++ N E
Sbjct: 127 AQLYQENRRE 136
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 85.4 bits (202), Expect = 3e-17
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = +2
Query: 326 VTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNID-RLGRICLDILKDKWSP 502
+ GP D+ YP S P V+F TKI+HPN+ + G ICLDILKD+W+
Sbjct: 43 IRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQWAA 102
Query: 503 ALQIRTVLLSIQALLSAPNPDDP 571
+L +RTVLLSIQAL+ P P DP
Sbjct: 103 SLTLRTVLLSIQALMCTPEPKDP 125
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 84.6 bits (200), Expect = 5e-17
Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 14/144 (9%)
Frame = +2
Query: 227 RRIIKETQRLMQEPVPGISAVP-SETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 403
+R++ E + L P GI A P E N + ++TGPE++ DYP+
Sbjct: 7 KRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDYPL 66
Query: 404 SAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLLSIQAL 544
S PK+RF I+HPNI GR+C+ IL ++WSP I +LLS+ ++
Sbjct: 67 SPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLSVVSM 126
Query: 545 LSAPNPDDPLANDVAELWKVNESE 616
L+ PN + P A++W+ + ++
Sbjct: 127 LAEPNDESPANVSAAKMWREDRAQ 150
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 79.4 bits (187), Expect = 2e-15
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 14/140 (10%)
Frame = +2
Query: 239 KETQRLMQEPVPGISAVPSETNARY-FHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPK 415
K+ + + PV G SA + N Y + V+V GP D+ DYP PK
Sbjct: 10 KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 416 VRFITKIYHPNIDRLGRICLDILKD-------------KWSPALQIRTVLLSIQALLSAP 556
++FI++I+HPNID+ G +C+ IL D +W P + T+LLS+ ++L+ P
Sbjct: 70 MKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDP 129
Query: 557 NPDDPLANDVAELWKVNESE 616
N + P D A++ + N +E
Sbjct: 130 NFESPANVDAAKMQRENYAE 149
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 76.2 bits (179), Expect = 2e-14
Identities = 50/142 (35%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Frame = +2
Query: 197 DRIFKMA-ALPRRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXX 373
D++ +A A R KE GI E N + GPE +
Sbjct: 13 DKMSNLALARVTRKCKEVANASDITEAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEI 72
Query: 374 XXXXXXDYPMSAPKV---------------RFITKIYHPNID-RLGRICLDILKDKWSPA 505
YP PKV +F+T+I+HPNI + G ICLDILKDKW+ +
Sbjct: 73 KVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTAS 132
Query: 506 LQIRTVLLSIQALLSAPNPDDP 571
L +RTVLLS+QA+L +P P DP
Sbjct: 133 LTLRTVLLSLQAMLCSPEPSDP 154
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 74.5 bits (175), Expect = 5e-14
Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Frame = +2
Query: 227 RRIIKETQRLMQEPVPGISAVP-SETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 403
RR+ KE L V V ETN + V++ P+ DYP
Sbjct: 5 RRLQKELGDLKNCGVKAYENVECEETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDYPF 63
Query: 404 SAPKVRFITKIYHPNIDRLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDPLAN 580
PKV F TKIYHPN+D G+ CL I+ + W PA + V++++ +L++ P P P+
Sbjct: 64 KPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLINEPEPSHPIRA 123
Query: 581 DVAE 592
DVAE
Sbjct: 124 DVAE 127
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 70.5 bits (165), Expect = 9e-13
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Frame = +2
Query: 227 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 406
R + E + L +PV G + +E N + V + GP + +YP S
Sbjct: 13 RALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPSNYPYS 72
Query: 407 APKVRFITKIYHPNIDRLGRICLDILK-------------DKWSPALQIRTVLLSIQALL 547
P ++F TK++HPN+ G +C+ IL ++W+P +RT+LLS+ +LL
Sbjct: 73 PPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLSVISLL 132
Query: 548 SAPNPDDPLANDVAELWK 601
+ PN P D + +++
Sbjct: 133 NEPNTSSPANVDASVMYR 150
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 63.3 bits (147), Expect = 1e-10
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +2
Query: 392 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 565
D+P + PK +F ++HPN+ G +CL +L + W P++ I+ +L+ IQ LL+ PN +
Sbjct: 67 DFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIE 126
Query: 566 DPLANDVAELWKVNESE 616
DP + +++ N +E
Sbjct: 127 DPAQAEAYQIYCQNRAE 143
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 63.3 bits (147), Expect = 1e-10
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Frame = +2
Query: 218 ALPRRIIKETQRLMQEPVPGISAVPSETN--ARYFHVIVTGPEDSXXXXXXXXXXXXXXX 391
A RR++KE +L E G+ + T+ + + + V G E +
Sbjct: 4 AATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTFGP 63
Query: 392 DYPMSAPKVRFITKIY--HPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSA 553
YP ++P+V F+ + HP+I G ICL IL D W+PAL +++V LSI ++LS+
Sbjct: 64 QYPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSILSMLSS 119
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 63.3 bits (147), Expect = 1e-10
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Frame = +2
Query: 392 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 565
D+P + PK +F ++HPN+ G +CL +L + W P++ I+ +L+ IQ LL+ PN +
Sbjct: 67 DFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIE 126
Query: 566 DPLANDVAELWKVNESE 616
DP + +++ N +E
Sbjct: 127 DPAQAEAYQIYCQNRAE 143
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 61.3 bits (142), Expect = 5e-10
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Frame = +2
Query: 314 FHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRL-GRICLDILKD 490
F V GP+D+ YP +P + F+ KI+HPNID G +CLD++
Sbjct: 35 FIVRFHGPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQ 94
Query: 491 KWSPALQIRTVL-LSIQALLSAPNPDDPLANDVAELW 598
W+ + + + LL+ PN DPL + A L+
Sbjct: 95 AWTALYDLTNIFDTFLPQLLTYPNAADPLNGEAARLY 131
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 56.0 bits (129), Expect = 2e-08
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Frame = +2
Query: 227 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 406
RR+ K+ +LMQ+PV GI A+P+E N +H + G D+ ++P S
Sbjct: 22 RRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGYYWGKVIFKENFPWS 81
Query: 407 APKVRFITKIYHPNIDRLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLA 577
P + IT + R+CL D + W+P + +L+ + + + N + P A
Sbjct: 82 PPAITMITP--NGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFM---NENSPAA 136
Query: 578 NDVA 589
+A
Sbjct: 137 GSIA 140
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 54.4 bits (125), Expect = 6e-08
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Frame = +2
Query: 224 PRRIIKET-QRLMQEP-VPGISAVPSETNA-RYFHVIVTGPEDSXXXXXXXXXXXXXXXD 394
P ++I T Q L +EP V + V + + I+ G E++
Sbjct: 348 PMKVISVTPQNLPEEPNVSETNIVTVKFRLPKGIQGIIKGVEETPYEGGIFELDIKIGES 407
Query: 395 YPMSAPKVRFITKIYHPNIDRL-GRICL-DILKDKWSPALQIRTVLLSIQALLSAPNPDD 568
YP AP V+FITKI+HP++ G ICL D+ W ++ I VL+ IQ+ +S N +
Sbjct: 408 YPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNGVWPVSMTIYKVLIVIQSWMSNFNEKE 467
Query: 569 PLANDVAE 592
P+ ++ E
Sbjct: 468 PIDVEILE 475
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 53.2 bits (122), Expect = 1e-07
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Frame = +2
Query: 227 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 406
+R+ K+ QRL++EPVP + A P ETN + I+ G + D+P
Sbjct: 11 QRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDFPFK 70
Query: 407 APKVRFITKIYHPNIDRLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNP 562
P + +T + R+CL D D W+PA + T++ + + ++ P
Sbjct: 71 PPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQP 123
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 49.2 bits (112), Expect = 2e-06
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +2
Query: 392 DYPMSAPKVRFITKIYHPNIDRLG-RICLD-ILKDKWSPALQIRTVLLSIQALLSAPNPD 565
+YP P ++F +YHPN+D + +C +L++ W P + VLL++ LL+ P+
Sbjct: 71 EYPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLLNEPDLS 130
Query: 566 DPLANDVAELWKVNESEAI 622
P+ D A + N+ E +
Sbjct: 131 RPVNIDAAHDYIHNKVEFV 149
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Frame = +2
Query: 320 VIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITK-----IYHPNIDRLGRICLDIL 484
V+++GP+D+ YP S PK F+T ++PN+ G+ICL IL
Sbjct: 447 VLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSIL 506
Query: 485 -------KDKWSPALQIRTVLLSIQALL 547
++KW+P + VL+SIQ ++
Sbjct: 507 GTWEGRPEEKWNPYCSLMQVLVSIQEVI 534
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 43.6 bits (98), Expect = 1e-04
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = +2
Query: 287 VPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRLGR 466
VPS + + VT P++ +Y P V+ +TK++HPNI+ G
Sbjct: 52 VPSTSCLHELELTVT-PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGS 110
Query: 467 ICLDILKDK------WSPALQIRTVLLSIQALLS-APNPDDPLANDVAELWKVN 607
ICL IL+ W P + V+ + +L + + +D L A++W N
Sbjct: 111 ICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFNDLMDFNDALNIQAAQMWSQN 164
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 41.1 bits (92), Expect = 6e-04
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Frame = +2
Query: 227 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 406
RR++KE L Q P A P E N +H + G + DYPM
Sbjct: 13 RRLMKEAMELRQ-PTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIFPADYPMK 71
Query: 407 APKVRFITKIYHPNIDRLGRICLDIL---KDKWSPALQIRTVLLSIQALL 547
P + +T +++ ++CL I + W P+ IRT LL++ L
Sbjct: 72 PPNLILLTPNGRFELNK--KVCLSISGYHPETWLPSWSIRTALLALIGFL 119
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +2
Query: 395 YPMSAPKVRFITKIYHPNIDRLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPN 559
+P+ P F T ++HPN+D G I L +L ++ WS ++ +L I LL+ P+
Sbjct: 97 WPIIPPICEFKTPLHHPNVDLRGSIYLKMLEQEHWSSETSLKKLLREISNLLATPD 152
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 31.1 bits (67), Expect = 0.67
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +2
Query: 236 IKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSA-P 412
+ ++ L + V G ET FHVI+ GP S S P
Sbjct: 38 MNRSRHLQGKKVNGCIMRIDETKQLLFHVIIDGPVGSIYEGGTFFADINIQPYQNHSLIP 97
Query: 413 KVRFITKIYHPNIDRLG 463
+V F T I+HPN+ + G
Sbjct: 98 RVCFHTFIFHPNLGKYG 114
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +2
Query: 392 DYPMSAPKVRFITKIYHPNIDRLGRIC----LDILKDKWSPALQIRTVLLSIQ 538
+YP P VRF TK++ +++ + L L++ WS + I+TVL I+
Sbjct: 67 NYPREPPTVRFTTKVHMVGVNQSNGVIDKRNLTTLRN-WSNSYMIKTVLEDIR 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,306,151
Number of Sequences: 27780
Number of extensions: 262415
Number of successful extensions: 592
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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