Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c01
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    28   1.00 
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    27   2.3  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   9.3  
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    25   9.3  

>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +3

Query: 270 MDLVSLETSDENEWVK-ARIVQDKIK---YIWTSGRLCDFKGCNRPDLLPNEINGWFWTA 437
           MDLV   TSD++EW K +R  +   K   Y W   R  + KG   P   PN    +F T+
Sbjct: 105 MDLVLNHTSDQHEWFKESRSSKTNPKRDWYFWKPARYNE-KGERLP---PNNWRSYFDTS 160

Query: 438 ELQKLAPTTNRQQNDWSEG 494
             +    T     + WS G
Sbjct: 161 AWEWDEATQEYYLHLWSVG 179


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 364 RPDVQMYFILSWTIRALTHSFSSL 293
           + D+Q YF LSW I    H  S +
Sbjct: 183 KADIQCYFALSWLITWFAHDVSDI 206


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 631 GLRWWQATSCQW 596
           GL WW+A  C W
Sbjct: 85  GLNWWEAWICVW 96


>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 62  IISCASGGGPGTVPQW 109
           +I CASG G G V  W
Sbjct: 77  LIDCASGSGDGAVKLW 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,088
Number of Sequences: 5004
Number of extensions: 58079
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)