Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c01
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0290 - 23879064-23880035                                         31   0.59 
03_01_0522 - 3919120-3919696,3919835-3919919,3919955-3919985,392...    31   1.0  
07_01_0349 + 2521006-2522439                                           29   2.4  
07_01_0013 - 99952-100413,100534-100704                                29   4.1  
02_05_0632 + 30490575-30490808,30490898-30491173,30491287-30491352     29   4.1  
05_03_0614 - 16206005-16206586,16207585-16207608,16209746-162098...    27   9.6  
03_05_0858 + 28309266-28311143                                         27   9.6  
02_01_0608 + 4557017-4557265                                           27   9.6  
01_01_0869 + 6786136-6788577                                           27   9.6  
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59...    27   9.6  

>05_05_0290 - 23879064-23880035
          Length = 323

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 24/87 (27%), Positives = 35/87 (40%)
 Frame = +3

Query: 234 WLSARNYCRQRCMDLVSLETSDENEWVKARIVQDKIKYIWTSGRLCDFKGCNRPDLLPNE 413
           WL   + C     +L S ET D NE      V+D  + +   G     +  NRP  +   
Sbjct: 229 WLELHSSCPVCRFELPSEETKDLNEPSNIGRVEDSHEEVRADGPGNVSESSNRPWAIVPW 288

Query: 414 INGWFWTAELQKLAPTTNRQQNDWSEG 494
           +N  F T E Q     +  QQ+  + G
Sbjct: 289 LNELFSTREAQNAGGVSTDQQSPHTSG 315


>03_01_0522 -
           3919120-3919696,3919835-3919919,3919955-3919985,
           3920078-3920158,3920271-3920338,3920645-3920698,
           3921023-3922379
          Length = 750

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 544 PPCISSRLSGCGFPMPPPSDQSFC 473
           PP  S + S CG  +PP S Q FC
Sbjct: 615 PPRPSQQFSACGTMLPPSSSQPFC 638


>07_01_0349 + 2521006-2522439
          Length = 477

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 162 HGCFSVHTKKAPEAPGYVHWGTVPGPPP 79
           HGC +   ++   +  YV +GTV  PPP
Sbjct: 266 HGCLAWLARRPAGSVAYVSFGTVAAPPP 293


>07_01_0013 - 99952-100413,100534-100704
          Length = 210

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 459 TTNRQQNDWSEGGGIGKPQPDNRELIQGGASEHCVAI 569
           TTNR       G G G+ Q  +R+ +QGG    C  I
Sbjct: 3   TTNRMLATKPRGDGKGREQGPSRQRLQGGHYAFCTTI 39


>02_05_0632 + 30490575-30490808,30490898-30491173,30491287-30491352
          Length = 191

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 565 ATQCSEAPPCISSRLSGCGFPMPPPS 488
           AT CS AP    +RL   G  +PPPS
Sbjct: 3   ATACSTAPLLGGARLPAVGAALPPPS 28


>05_03_0614 -
           16206005-16206586,16207585-16207608,16209746-16209879,
           16210703-16210832
          Length = 289

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 604 CQWTPSL*KLFKIATQCSEAPPCISSRL-SGCGFPMPPPS 488
           C W P+   +   ++    +PP I+S L SG  FP P  S
Sbjct: 210 CSWAPTSSSMAMTSSPAPLSPPSIASILISGSHFPTPTTS 249


>03_05_0858 + 28309266-28311143
          Length = 625

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 375 FKGCNRPDLLPNEIN-GWFWTAELQKLAPTTNRQQNDWSEGGGIGKPQPDNRELIQ 539
           F GC+R  ++   I  G  W A LQ LA       +      G+G PQPD  + +Q
Sbjct: 338 FAGCHRVHVVDFGIKQGMQWPALLQALALRPGGPPS--FRLTGVGPPQPDETDALQ 391


>02_01_0608 + 4557017-4557265
          Length = 82

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 62  IISCASGGGPGTVPQWTYPGASGAFFVCTEK 154
           ++S  +GGG    P W +      F +C E+
Sbjct: 11  VVSSLAGGGEAMAPNWDFGSIIWHFAICDER 41


>01_01_0869 + 6786136-6788577
          Length = 813

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +2

Query: 77  SGGGPGTVPQWTYPGA--SGAFFVC 145
           SG   G VP+WT+P    SG  F C
Sbjct: 291 SGADAGWVPRWTFPSGCKSGGGFFC 315


>01_01_0078 +
           587975-588179,588506-588606,589087-589167,589240-590178,
           590388-590542,590837-590902,590963-591023,591659-591853,
           591939-592049,592116-592280
          Length = 692

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -1

Query: 310 HSFSSLVSRDTRSMQRCRQ*FLALNQS-SSTPRSAGSRH-EKKYPLLSA 170
           H+FSSLVS  T  +      + +++Q+ SST  S+ S H +   PLL++
Sbjct: 326 HNFSSLVSNKTADIPGSTLAYQSVSQAVSSTVASSSSAHMDMPVPLLAS 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,074,362
Number of Sequences: 37544
Number of extensions: 480342
Number of successful extensions: 1643
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1643
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)