Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19c01
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.009
SB_56031| Best HMM Match : Lectin_C (HMM E-Value=3.3e-08)              33   0.20 
SB_49294| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)              33   0.20 
SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)              32   0.34 
SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.80 
SB_58330| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)                        31   1.1  
SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.4  
SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074)                  29   3.2  
SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)                     28   7.4  
SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  
SB_18120| Best HMM Match : Colipase_C (HMM E-Value=0.87)               27   9.8  
SB_2875| Best HMM Match : WAP (HMM E-Value=0.052)                      27   9.8  
SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)             27   9.8  
SB_2584| Best HMM Match : SPRY (HMM E-Value=0.014)                     27   9.8  

>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2516

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 27/85 (31%), Positives = 44/85 (51%)
 Frame = +3

Query: 234  WLSARNYCRQRCMDLVSLETSDENEWVKARIVQDKIKYIWTSGRLCDFKGCNRPDLLPNE 413
            W+ AR++CR+   DLVSL T++EN +V + I      Y WT      + G N  DL    
Sbjct: 1465 WMEARDFCRKSRGDLVSLRTANENAFVFSEI--KTRYYYWTV-----WIGLN--DLGTEG 1515

Query: 414  INGWFWTAELQKLAPTTNRQQNDWS 488
            +N W   + +  +    N++ N+W+
Sbjct: 1516 VNTWSDGSPMSYI-NWGNKEPNNWN 1539


>SB_56031| Best HMM Match : Lectin_C (HMM E-Value=3.3e-08)
          Length = 129

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 174 DNKGYFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVKA 320
           D+  ++F  +   L  VEE W +A   CR R   LV +    ENE++++
Sbjct: 3   DSSWHYFDGKCYFLSTVEEPWTAAERSCRVRGSTLVIVNNLMENEFIRS 51


>SB_49294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 174 DNKGYFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVKA 320
           D+  ++F  +   L  VEE W +A   CR R   LV +    ENE++++
Sbjct: 60  DSSWHYFDGKCYFLSTVEEPWTAAERSCRVRGSTLVIVNNLMENEFIRS 108


>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
          Length = 695

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 234 WLSARNYCRQRCMDLVSLETSDENEWVKARIVQDKIKYIW 353
           W SA   C ++   LV++E S E   VK+ + ++K  Y W
Sbjct: 167 WESAVQRCTEQFASLVTIENSIEEAMVKSMLTENKRNYTW 206


>SB_38168| Best HMM Match : Lectin_C (HMM E-Value=7.9e-06)
          Length = 583

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 165 RYADNKG-YFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVK 317
           RY   +G Y+++ +       EE W   + YC  +  DL  +   +ENE+++
Sbjct: 91  RYKCKQGWYYYNGKCYHYSSFEETWTQGQRYCLDQDADLAIINDREENEFIR 142


>SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 228 EDWLSARNYCRQRCMDLVSLETSDENEWVKARI 326
           E W   R  C+ +  DLVS+ET  E  +VK+ +
Sbjct: 869 ESWAEGRKTCQSKGGDLVSIETDGEWSYVKSLV 901


>SB_58330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +3

Query: 180 KGYFFSWRDPALRGV--EEDWLS---ARNYCRQR-CMDLVSLETSDENEWVKARI 326
           +G+ F   D + + V   +DW +   A   C+Q     LVS+ET DEN W+  RI
Sbjct: 122 RGFVFERGDFSYKIVLARDDWRTFYEAEQICQQEEDGHLVSIETRDENNWINDRI 176



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 483 WSEGGGIGKPQ--PDNRELIQGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVC 641
           WS+   +G+P   P        G  + CVA++   +     WHD  C ++ PF+C
Sbjct: 339 WSDKTLMGRPNWAPGQPTGRSNGQEKDCVAMV--MHPSPGKWHDEYCLNQLPFIC 391


>SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)
          Length = 529

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 531 LIQGGASEHCVAILNNFYNDGVHWHDVACH 620
           L+  G+  H ++++   +N+ VH HDV C+
Sbjct: 266 LVPYGSRNHAMSVVTECFNEYVHRHDVRCY 295


>SB_40810| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 504 GKPQPDNRE-LIQGGASEHCVAILNNFYNDGVHWHDVACHHRKPFVC 641
           G+P   + + L+     E CV I    +N+ V W D+ C  + P+VC
Sbjct: 109 GEPNDKHYDRLLPRCTGEDCVQI--KIWNNTVTWADLGCETKLPYVC 153


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 234 WLSARNYCRQRCMDLVSLETSDENEWVKARI 326
           W   R  C+ R  DLVS+ET +E  ++  +I
Sbjct: 370 WTENREKCKSRNGDLVSMETEEEWSFINKKI 400


>SB_16280| Best HMM Match : PA14 (HMM E-Value=0.00074)
          Length = 643

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +3

Query: 162 ERYADNK-GYFFSWRDPALRGV---EEDWLSARNYCRQRCMDLVSLETSDENEWVKARI 326
           ER+ + + G+   W D  +        +W + R YC     DLVS+ET  + ++++  I
Sbjct: 5   ERHEEERHGHAVRWHDGKIYAFIANGSEWKANRKYCLAHNGDLVSIETEKKWQFIRDEI 63


>SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1451

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 378 KGCNRPDLLPNEIN 419
           KGC++P  LPNEIN
Sbjct: 291 KGCDKPGRLPNEIN 304


>SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 577

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 414 ING-WFWTAELQKLAPTTNRQQNDWSEGGGIGKPQPDNRELIQGGASEHCVAILNNFYND 590
           +NG W WT     L   +  +  +WS+G  +        +       ++CVA+     + 
Sbjct: 354 VNGIWIWTG----LNDRSVERGYEWSDGSPVSFTSWLYGQPNDHWGRDNCVAVQTRMGS- 408

Query: 591 GVHWHDVACHHRKPFVC 641
              W+DV C  R+ ++C
Sbjct: 409 ---WNDVNCMQRRGYIC 422


>SB_36350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -2

Query: 111 VHWGTVPGPPPLAQLIIRVPMSSFSRCVQD 22
           V W  V G PP   LI  V MS F R + D
Sbjct: 431 VDWRGVMGKPPNVLLIENVDMSKFKRMMLD 460


>SB_18120| Best HMM Match : Colipase_C (HMM E-Value=0.87)
          Length = 363

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 195 SWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWVKAR 323
           S +  +L G  ED+   R Y   +C+ + S+ T+ E E VK R
Sbjct: 191 SCKSSSLDGAREDFPCLRTYLENKCV-IGSMTTNSEFEVVKQR 232


>SB_2875| Best HMM Match : WAP (HMM E-Value=0.052)
          Length = 244

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 540 GGASEHCVAILNNFYNDGVHWHDVACHHRKPFVC 641
           GGA+E+CVA   +       W D +C  + P++C
Sbjct: 31  GGAAENCVAWTTS--KPISCWSDKSCSEKHPYMC 62


>SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)
          Length = 1182

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 141 CVQRNIHERYADNKGYFFSWRDPALRGVEEDWLSARNYCRQRCMDLVSLETSDENEWV 314
           C+  +I  R  ++  Y+   R+ A       W  AR  C     DLV + + +ENE+V
Sbjct: 113 CIYASIRPRKVNDSCYWADTREMA-------WNDARAACGDMGGDLVQIASKEENEFV 163


>SB_2584| Best HMM Match : SPRY (HMM E-Value=0.014)
          Length = 408

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 135 SLCVQRNIHERYADNKGYFFSWRDPA-LRGVEEDWLSARNYCRQRCMDLVSLETSDENEW 311
           SLC   N  +RY +  G  F  +D A +  V E+ ++ R+   +     +S  TS    W
Sbjct: 84  SLCYWENTKKRYLEKFGEHFPGQDDANIAKVYEELVNTRDRVTRLLATSLSEPTSPPETW 143

Query: 312 VKAR 323
             +R
Sbjct: 144 RTSR 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,860,615
Number of Sequences: 59808
Number of extensions: 498027
Number of successful extensions: 1346
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)